<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11679

Description pre-mRNA-processing protein 40C isoform X1
SequenceMAQPPLIGETPISIPNSSSSSATPATSPAAPISYGVNQNVNASGNSQQSSSHSGMKPNSGVNPPLVPGFPPRAATPSFSYNVSQSVAPFTGNQHAQSSTNMSDSIAQDFSKVSSASSNPHPIPAPTSISAMPPPSDPNYRPTTLWMPTAPTFPVHTLMPGTPGPPGLAKPGIMPSNPAAPSSNTDFPSSAVPRPNMPTAPIGSDPNASHKGLPYPPIPSMVAPPQGFWLQPPQMSGVHRPPFLQYPAAFPGPFPFPARGVTLPAVPVPDSQPPGVTPVGAAGISAFSVSSHQLRGTSGLQTVVISAHADDKKLNATVTHNEDAANDQLDAWTAHKTEAGIVYYYNALTGESTYDKPAGFKGEAHQVSVQPTPVSVVDLPGTDWQLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDAAKDHLMPVLNATVLPDRGFGMVTLNAPAITTGGRDAATVKPFSVQSSPSALDLIKKKLQESGTPITSSSIPMPSVQPGSESNGSKATDSTAKSLQNDNSKDRQKDANGDANASDTSSDSEDEDSGPSKEECINQFKEMLKERGVAPFSKWEKELPKFVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDINHNTDYHTFRKKWANDSRFEALDRKEREHLLNERVLPLKKAVEEKAQAMWDAAAAGFKSMLKEQGDITFNSRWSRIKESLRDDPRYKSVKHEDREVLFNEYISELKAAEHAAERESRAKKEEQEKLRERERELRKRKEREEHEMERVRLKIRRKEAVTSLQALLVETIKDPMASWTESKPKLEKDPQGRATNSDLDSADMEKLFRDHIKMLQERCAHDFRALLAEVLTSEAASQETDDGKTVLNSWSTAKRLLKSDPRYNKFPRKDREALWRRYVEDMLRRQKSSHDSKEDKHTDARGRNSQQSSKLPLESGRSHERR
Length953
PositionUnknown
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.06
Grand average of hydropathy-0.820
Instability index54.14
Isoelectric point8.58
Molecular weight105025.05
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11679
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     425.76|     100|     101|      63|     162|       1
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   63-  162 (185.78/67.78)	PP.LV.PG.FPPRAATPSFSYNV.SQSVAPFTGNQ......HA.....QSSTNM.SDSIAQDFSKVSSASSNPHP.I....PA....PTSISAMPPPSDPNYRPTTLWMPTA.P...TFPVHTL.MPGTP
  164-  266 (121.20/42.06)	PPgLAkPGiMPSNPAAPSSNTDF.PSSAVP...........RP.........NMpTAPIGSDPN..ASHKGLPYPpI....PSmvapPQGFWLQPPQMSGVHRPPFLQYPAAfPgpfPFPARGVtLPAVP
  269-  381 (118.78/41.10)	DS.QP.PG.VTPVGAAGISAFSVsSHQLRGTSGLQtvvisaHAddkklNATVTH.NEDAANDQLDAWTAHKTEAG.IvyyyNA....LTGESTYDKPA..GFKGEAHQVSVQ.P...T.PVSVVdLPGT.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     472.17|     105|     110|     728|     832|       2
---------------------------------------------------------------------------
  550-  637 (114.23/57.70)	....................KE......ECINQFKEMLKERG............VAPFSK.WEKELPKFVFDPRFKAIPS..YS.ARRSLFEHYVKT.RAEEERKEKRA.AQKAAIEGfkqlLDEASEDINH
  659-  770 (142.15/73.42)	RKEREHLLNERVlPLKkaVEEKaqamwdAAAAGFKSMLKEQG............DITFNSrWSRIKESLRDDPRYKSVKHE....DREVLFNEYISELKAAEHAAERESRAKKEEQEK....LRERERELRK
  771-  846 (113.84/57.48)	RKEREEHEMERV.RLK..IRRK......EAVTSLQALLVETI............KDPMAS.WTESKPKLEKDPQGRATNSDLDSaDMEKLFRDHI...KM.............................L..
  847-  938 (101.95/50.78)	.QERCAHD..........FR...............ALLAEVLtseaasqetddgKTVLNS.WSTAKRLLKSDPR....YNKFPRkDREALWRRYVEDMLRRQKSS.HDSKEDKHTDAR....GRNSQQ....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.42|      12|      20|     519|     530|       3
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  519-  530 (21.02/11.86)	DNSKDRQKDANG
  536-  547 (20.40/11.28)	DTSSDSEDEDSG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.79|      23|      24|      14|      37|       6
---------------------------------------------------------------------------
   14-   37 (35.60/24.68)	IPNSSSSSATPATSPAAPISyGVN
   40-   62 (41.18/23.57)	VNASGNSQQSSSHSGMKPNS.GVN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11679 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EHAAERESRAKKEEQEKLRERERELRKRKEREEHEMERVR
2) ESGTPITSSSIPMPSVQPGSESNGSKATDSTAKSLQNDNSKDRQKDANGDANASDTSSDSEDEDSGPSKEECINQFK
3) MAQPPLIGETPISIPNSSSSSATPATSPAAPISYGVNQNVNASGNSQQSSSHSGMKPNSGVNPPLVPGFPPRAATPSFSYNVSQSVAPFTGNQHAQSSTNMSDSIAQDFSKVSSASSNPHPIPAPTSISAMPPPSDPNYRPTTLWMP
4) MLRRQKSSHDSKEDKHTDARGRNSQQSSKLPLESGRSHERR
5) PTFPVHTLMPGTPGPPGLAKPGIMPSNPAAPSSNTDFPSSAVPRPNMPTAPIGSDPNASHKGLPYPP
6) SWTESKPKLEKDPQGRATNSDLDSADMEKL
744
482
1
913
150
809
783
558
147
953
216
838










Molecular Recognition Features






MoRF SequenceStartStop




1) EALWRRYVEDMLRRQK
2) RYNKFPRK
903
893
918
900