<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11663

Description U-box domain-containing protein 35-like isoform X2
SequenceMDRIQETDQSNKTRYSSSSAVALAIKGSKKSKYVVQWALNKFVPEGMIIFKLIHVHAVGVVLPVSQVRNDVAAAYKKEVEHQINQMVLPFKKMCEQRKVHVDVVLIESDDVASAVAEEVTKDAITKLVIGASSGGIFKSKQKSMSAKISVRTPRFCTVYAVSKGNLSIRPSDMQIDETITDDTSEISFSSSSSSNYTSTTQTDSGSVASYAALHTSSLATQRFQALSNMNQTLLSTTHGLNETNHSRGQSIDLGRENPATSSARNSDFGRALSRASSYRSIVSDPESWINDQNCLKGSPVATKLSSPNRQENFTLELEKLRIELRHFQGMHAVAQTENIDASRKLNELSKRRSGESMKMKEIIAKEEVANELATQQREKYEAAAREAEYLKECAEREAAERKETELKAIRAAKEKEKLEDALSGSTLQYRKFTWDEIVLATSSFSEELKIGMGAYGMVYKCTLHHTTVAVKVLHSAGISQNKQFQQELEILSRIRHPNLLLLLGACSDHGCLVYEYMENGNLEDRLLQKNSNNPIPWFERFRIAWEVASALSFLHSSKPQPIIHRDLKPANILLGRNLVSKIGDIGLSTILNSDELSTMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPAIALTHVVEMAIEGGNLTDILDPKAGSWPFQETLDLARLALSCAELRRKDRPDLKDHVLPILERLKEVSDRAHHSASMITIKPKPPNHFICPILQDLMDDPCVAADGYTYNRNAIEKWLEENEKSPMTNMDLPHKLLIPNYTLLSAILEWKSKEI
Length798
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.06
Grand average of hydropathy-0.371
Instability index40.33
Isoelectric point6.91
Molecular weight89075.44
Publications
PubMed=26259924

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11663
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.10|      29|     170|     294|     326|       1
---------------------------------------------------------------------------
  294-  322 (49.53/27.35)	C.L.....KGSPVATK.LSSPNRQEN..FTLELEKL.RI
  461-  494 (32.06/13.55)	CtL.....HHTTVAVKvLHSAGISQNkqFQQELEILsRI
  511-  543 (42.51/18.83)	C.LvyeymENGNLEDR.LLQKN.SNN..PIPWFERF.RI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.94|      32|     174|       7|      38|       2
---------------------------------------------------------------------------
    7-   38 (52.62/31.31)	TDQSNKTRYSSSSAVALAIKGSKKSKYVVQWA
  180-  211 (52.32/31.09)	TDDTSEISFSSSSSSNYTSTTQTDSGSVASYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.28|      33|     103|     221|     253|       3
---------------------------------------------------------------------------
  221-  253 (56.81/34.09)	QRFQALSNMNQT.LLSTTHGLNETNHSR.GQSIDL
  325-  359 (48.47/28.14)	RHFQGMHAVAQTeNIDASRKLNELSKRRsGESMKM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.04|      28|      42|      58|      88|       7
---------------------------------------------------------------------------
   58-   88 (43.11/33.86)	VGVVLPVSqvrNDVAAAYKKEV.EHQINQMVL
  101-  129 (39.93/23.70)	VDVVLIES...DDVASAVAEEVtKDAITKLVI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11663 with Med32 domain of Kingdom Viridiplantae
Unable to open file!