<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11662

Description U-box domain-containing protein 35-like isoform X1
SequenceMDMIQEGDENSKCSVVGLAIKGNKKSKYVVQWALDKFVNEGVISFKLIHVRAVIKGVPTPMGDVLPLSQVRNDVATSFKREIEWQTNHMLLPFKSLCEHRKVHVDVVVIESDEVATAVAEEVAKNSINKLVLGASSPGLFKSKHKGMSAKISVCIPRFCTVYAVSKGKLSIRPSDMEIDGSIIDDTSETSFSSSSSSNYTSTNLTDSSSVASSAALHSSSLPTRQIKALSTINHTFLSTSSSLNEINHYRGQSLDLGRKHVASSSSRNSDIDHIASQASSCGSISDNESWIYDQNSAKYVPQVTKLPSPNREENFNLELEKLRIELRHAQGMHAVAQSENIDASQKLNELNKRRVEESMKMKEIIAKEEMAKELANQEREKYEAAARETEYLKQCAGREAAERRESEMKATHAAKEKEKLEDALSGSTPQYRMFTWEEIVSATSSFSEDLMIGKGAYGMVYKCALHHTTVAVKVLHSNGNHKSKQFQQELEILSRICHPNLLLLLGACPDHGCLVYEYMENGNLEDKLFQKNSTTSIPWFERFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGRNLVSKIGDIGLSTILNSDDLSTMYKDTAPVGTLCYIDPEYQRSGLISPKSDVYAFGLVVLQLLTAKPAMALTDMVETAIDNGNLADILDPKAGSWPLQETLDIARLALSCAELRRKDRPDLKDHVLPMLERLKEVADGAAHSASIVNLKSRPPNHFICPILQDVMDDPCVAADGYTYDRNAIEKWLEENGKSPMTNMALPHKNLIPNYTLLSAILEWKS
Length797
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.06
Grand average of hydropathy-0.343
Instability index43.46
Isoelectric point6.23
Molecular weight88481.72
Publications
PubMed=26259924

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11662
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.44|      30|      67|     185|     214|       1
---------------------------------------------------------------------------
  185-  214 (48.14/25.35)	DTSETSFSSSSSSNYTSTNLTDSSSVASSA
  231-  253 (30.89/14.00)	TINHTFLSTSSSLNEINHYRGQS.......
  255-  278 (39.41/19.60)	DLGRKHVASSSSRN......SDIDHIASQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.47|      16|     461|      12|      27|       2
---------------------------------------------------------------------------
   12-   27 (28.89/20.40)	KCSV..VGLAIK.....GNKKSK
  462-  484 (18.59/10.54)	KCALhhTTVAVKvlhsnGNHKSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.94|      30|     461|     281|     310|       3
---------------------------------------------------------------------------
  281-  310 (55.93/29.52)	CGSISD........NESWIYDQNS.AKYVPQVTKLPSPN
  736-  774 (45.01/22.63)	CPILQDvmddpcvaADGYTYDRNAiEKWLEENGKSPMTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.91|      24|      25|     367|     390|       4
---------------------------------------------------------------------------
  367-  390 (38.46/23.48)	KEEMAKELANQEREKYEA..AARETE
  393-  418 (34.45/20.35)	KQCAGREAAERRESEMKAthAAKEKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.83|      21|      44|      87|     109|       6
---------------------------------------------------------------------------
   87-  109 (33.57/34.73)	NHMLL....P..FKSlcEHRKVHVDV.VVI
  128-  155 (23.27/14.91)	NKLVLgassPglFKS..KHKGMSAKIsVCI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.04|      43|     135|     502|     546|       7
---------------------------------------------------------------------------
  502-  546 (77.20/56.41)	LLLLGACPDHGC..LVYEYMENGNLEDKLFQKNSttSIPWFERFRIA
  638-  682 (70.83/45.60)	LQLLTAKPAMALtdMVETAIDNGNLADILDPKAG..SWPLQETLDIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.83|      15|      28|     311|     325|       8
---------------------------------------------------------------------------
  311-  325 (25.93/21.70)	REENFN....L.ELEKLRIE
  337-  356 (15.89/10.08)	QSENIDasqkLnELNKRRVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11662 with Med32 domain of Kingdom Viridiplantae
Unable to open file!