<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11658

Description mediator of RNA polymerase II transcription subunit 36a-like
SequenceMAPPRGRGGSSGGFRGRGDRGRGRGGGGGRGGDRGTPFKARGGGRGGARGGGRGGGRGGGRGGMKGGSKVLVEPHRHDGIFIAKGKEDALVTRNLVPGEAVYNEKRVSVQNEDSTKTEYRIWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAE
Length308
PositionUnknown
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.07
Grand average of hydropathy-0.441
Instability index30.22
Isoelectric point10.14
Molecular weight32722.86
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11658
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.89|      13|      15|      41|      53|       2
---------------------------------------------------------------------------
   41-   53 (28.28/ 9.36)	RGGGRGGARGGGR
   57-   69 (27.61/ 8.98)	RGGGRGGMKGGSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.03|      17|      17|     189|     205|       3
---------------------------------------------------------------------------
  169-  192 (20.30/12.42)	TGVVYAVEfshrsgrDLVNMAKKR
  193-  209 (30.72/22.22)	TNVIPIIE.......DARHPAKYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.52|      55|     159|      76|     136|       5
---------------------------------------------------------------------------
   76-  136 (75.63/44.43)	RHDGIFIAKGKEDALvtRNLVPGEAVYNEKrVSVQNEDSTKT.EYRiwNPFRSKlAAAVLGG
  240-  297 (87.89/40.36)	KAGGHFVISIKANCI..DSTVPAEAVFQSE.VNKLKADQFKPfEQVtlEPFERD.HACVVGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11658 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAPPRGRGGSSGGFRGRGDRGRGRGGGGGRGGDRGTPFKARGGGRGGARGGGRGGGRGGGRGGMKGGSKVL
1
71










Molecular Recognition Features






MoRF SequenceStartStop




1) MAPPRGRGGSSGGFRGRGDRGRGRGGGGGRGGDRGTPFKARGGGRGGARGG
1
51