<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11657

Description pre-mRNA-processing protein 40A-like
SequenceMSNNNPQYPGLQPIRPPIPGSVDPQRNFGPLMPVQFRSVVPPQQQQQFVPMPAQHYHQQFNVGMPPQNQQPQFSQPIQQFPPRAGQQLPHPSQVIPMPVVRPNMQPSSESMMPQPDSQAPNGYTPGLGGPGNGMPLSSSYMFAPSSYGQAQQPNFISTSQYQPVPQIQAPSGSSSQSITPGTSHQSNGEQPTVATFMHSATVVQPHLAKVGPSDWIEHNSSTGRRFYYNKRTKLSSWEKPFELMTPIERVDASTNWKEYSSPDGRKYYYNKITKESKWLIPEELKLAREQVEKAMINGALPEAVLNPRTQPSATSVSEAMPSADNSSLPGQGEPSSPVPVAPVVTTSPSNLQSEIAPGSCGSPSTSAVTGTKVDEPEAPPVNTINPSDASVGSDRAIVSDINTSVTPMNDTNNFAAQDTVGSADGVPGEDKDDGKIDSTGENVNEVASETKTVEPESLVYANKMEAKDAFKSLLESVNVGPDWSWDRAMRLIINDKRYGALKSLGERKQAFNEYLSQRKKQEAEEKRMKHKKAREDFRKMLEESTELTSSTRFSKAVAIFENDERFKAVERDRDRKDMFDSFLEELMNKERAKALEERKRNTVEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEELRKTERKNRDEFRKLMDEHIASGILTAKTHWRDYHFKVKDLPAYLAVASNTSGSTPKELFEDVAEELEKQYVEEKSQIKDAVKLAKITLLTTWTFEDFKSALSEHISSPSTSDSNLKLVFEELLERAKEKEEKEAKKRKRLADDFFRLLFSIKDITESSKWEDSEPLLEDSQEFRSIGDASLCKQMFEEYVAQLREEAKENERKRKEERAKKDKDREERERRKSKQRREKEGGRERWKEETHKRDRTDSDGLDFNEIQTSKENRRSDDDNRKQRKQHQSPEETDKERTKKSHGHSSDRKKSRRHGSGHESDEGRHKRHRREHRDSHREGELLEDGEFGGDVVMDRW
Length1013
PositionUnknown
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.07
Grand average of hydropathy-1.122
Instability index60.74
Isoelectric point6.17
Molecular weight115931.45
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11657
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.93|      37|      38|     207|     243|       1
---------------------------------------------------------------------------
  207-  243 (71.42/46.27)	LAKVGPS.DWIEHNSSTGRRFYYNKRTKLSSWEKPFEL
  247-  284 (67.51/43.31)	IERVDAStNWKEYSSPDGRKYYYNKITKESKWLIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     122.29|      16|      17|     869|     884|       2
---------------------------------------------------------------------------
  869-  884 (25.38/14.64)	E.RKRKEERAKKDKDRE
  887-  902 (20.63/10.08)	E.RRKSKQRREKEGGRE
  923-  939 (16.84/ 6.44)	EiQTSKENRRSDDDNRK
  940-  955 (19.39/ 8.88)	Q.RKQHQSPEETDKERT
  958-  973 (19.01/ 8.52)	S.HGHSSDRKKSRRHGS
  983-  995 (21.04/10.47)	K.RHRREHR...DSHRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.30|      18|      23|      26|      48|       3
---------------------------------------------------------------------------
   30-   48 (35.21/26.20)	PlMPV.....QFRSVVPPQQQQ.QF
   50-   73 (28.09/ 8.15)	P.MPAqhyhqQFNVGMPPQNQQpQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     165.52|      34|      36|      75|     108|       4
---------------------------------------------------------------------------
   75-  107 (60.02/29.10)	......QPIQQFPPRA.GQ.QLPH...PSQVIPMPVVRPNM.QPS
  108-  145 (45.43/20.35)	SesmmpQPDSQAPNGY.TP.GLGG...PGN..GMPLSSSYMfAPS
  146-  174 (27.14/ 9.38)	S...............yGQaQQPNfisTSQYQPVPQIQAPS.GSS
  317-  340 (32.92/12.85)	S.....EAMPSADNSS.LP.GQGE...PSS..PVPV.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     415.58|      65|      65|     434|     498|       5
---------------------------------------------------------------------------
  359-  400 (45.99/20.73)	...SCGS...PSTSAV.......TGTKVDEPEA.PPVNTINPSDA..............S.VGSD....RA...IVSD....
  404-  434 (29.83/10.96)	...........................SVTP..MNDTNNFAAQDTVGS.A.D....GV.....PG...........EDKDDG
  435-  499 (100.95/53.93)	KIDSTGE...NVNEVA.......SETKTVEPESLVYANKMEAKDAFKSLL.E....SV.N.VGPDWSWDRAMRLIINDKRYG
  500-  566 (79.95/41.24)	ALKSLGErkqAFNEYL.......SQRKKQEAEEKRMKHK.KAREDFRKMLeE....ST.E.LTSSTRFSKAVAIFENDERF.
  594-  635 (50.57/23.49)	..............AL.......EERKR.........NTVE....YRKFL.E....SC.DfIKANTQWRKVQDRLEADERCS
  639-  698 (51.73/24.20)	KIDRL.E...IFQDYLrdlekeeEEQKKIQKEELRKTER.KNRDEFRKLM.DehiaSG.I.LTAKTHW..............
  787-  841 (56.57/27.12)	...........FEELL........ERAKEKEEKEAKKRKRLADDFFR.LL.F....SIkD.ITESSKWEDSEPLLEDSQEF.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11657 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MINGALPEAVLNPRTQPSATSVSEAMPSADNSSLPGQGEPSSPVPVAPVVTTSPSNLQSEIAPGSCGSPSTSAVTGTKVDEPEAPPVNTINPSDASVGSDRAIVSDINTSVTPMNDTNNFAAQDTVGSADGVPGEDKDDGKIDSTGENVNEVASETKTVEPESLVYA
2) MSNNNPQYPGLQPIRPPIPGSVDPQRNFGPLMPVQFRSVVPPQQQQQFVPMPAQHYHQQFNVGMPPQNQQPQFSQPIQQFPPRAGQQLPHPSQVIPMPVVRPNMQPSSESMMPQPDSQAPNGYTPGLGGPGNGMPLSSSYMFAP
3) QLREEAKENERKRKEERAKKDKDREERERRKSKQRREKEGGRERWKEETHKRDRTDSDGLDFNEIQTSKENRRSDDDNRKQRKQHQSPEETDKERTKKSHGHSSDRKKSRRHGSGHESDEGRHKRHRREHRDSHREGELLEDGEFGGDVVMDRW
4) QQPNFISTSQYQPVPQIQAPSGSSSQSITPGTSHQSNGEQPTVATFMH
295
1
860
151
461
144
1013
198










Molecular Recognition Features






MoRF SequenceStartStop




1) IRPPIP
14
19