<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11652

Description probable mediator of RNA polymerase II transcription subunit 26b
SequenceMKSGSLDQWRNYFRSSNSDIFDIIDYAIVVAASDCPKEFKLRRDKIAERLFSCKLTRCLGCDKVELAVNGDDDHEGCKSDGVEFGAGGSKESKVNDHGLMMDGNLVSNYSFGEAEALTDEIEEESQFVGEVLRIRDILNNRDEESDSVLFESLRRLELMELSVDLLKATEIGKVVNPLRKHGSKEVRQLARTLIDGWKEMVDAWVKVTTTTAITGSEGGTPDSVNPSVVDDEELEEGLPSPPLDEGAFFVAPTGTIELSQFFDGMDDDGNPRQSVQFNKNRDNGRKPTSGNQVTDKRKLQASNETTLAGNDNKSQQMKKNEAAVRLYKPVAADSGLRRPPSSNDQRKTNMELKMQQKVENGTLTKRPLVTHQEKPKCSDDAAKLEATKRKLQERYQQAENAKRQRTIQVMELNDLPKQGGGLRNSHFKPGNHNRQWGQGRR
Length441
PositionUnknown
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.05
Grand average of hydropathy-0.860
Instability index41.06
Isoelectric point5.66
Molecular weight49352.53
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11652
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.46|      14|      15|      60|      73|       1
---------------------------------------------------------------------------
   60-   73 (26.17/14.60)	GC..DKVELAVNGDDD
   76-   91 (22.29/11.50)	GCksDGVEFGAGGSKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.32|      26|      95|     296|     321|       2
---------------------------------------------------------------------------
  296-  321 (45.04/28.04)	KRKL.....QASNETTLAGNDNKSQQMKKNE
  336-  359 (37.54/22.28)	LRRP.....PSSNDQRKTNMELKMQQ..KVE
  388-  414 (27.74/14.76)	KRKLqeryqQAEN....AKRQRTIQVMELND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.98|      12|      15|     260|     271|       3
---------------------------------------------------------------------------
  260-  271 (24.15/14.55)	QFFDGMDDDGNP
  276-  287 (22.82/13.34)	QFNKNRDNGRKP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11652 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SQFFDGMDDDGNPRQSVQFNKNRDNGRKPTSGNQVTDKRKLQASNETTLAGNDNKSQQMKKNEAAVRLYKPVAADSGLRRPPSSNDQRKTNMELKMQQKVENGTLTKRPLVTHQEKPKCSDDAAKLEATKRKLQERYQQAENAKRQRTIQVMELNDLPKQGGGLRNSHFKPGNHNRQWGQGRR
2) TTTAITGSEGGTPDSVNPSVVDDEELEEGLPSPPLDEGAFF
259
209
441
249










Molecular Recognition Features






MoRF SequenceStartStop




1) AAVRLYKPVAA
2) LRNSHFKPGNH
3) WRNYFR
322
422
9
332
432
14