<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11651

Description mediator of RNA polymerase II transcription subunit 33A-like
SequenceMATAVPAQTIDADEQIPWLKVLRQTDLAIENNTDPNLWSTEITSTLLSSAVTFPSVELAHRLVSHLFWNNHSPTAWKLLHSAASFNIIPPLLLISLLSTRIVPSRELHPIAYRLYMELLKQNVFMLQSHIYSPNYQKIMESIDDVLQLSQVYSRKVCEPGVVLVEFVFSILWQLLEASLDDEGLLDHGPENKPRWISRSNAMSIDEPDCINGMKTEQKEGLQRENTAMAIEIIVEFLQNKMTLRLLSLVHRNMPSHWGSFNHQMQLLASNSSILKNLKHINADTLLSLMENIHGFGSNECNTTSKLESNVVISAGSQIYFAGQYYGSSWSSLWLPIDLILEDALDGGQVAAFSAIEIITGLVKILHAVNGTMWHKTFLGLWIAALRLVQRERDPNERPIPRLDTCMCMLLSITTHVVTNIIEEEESELIEEADSSPTNRGKNKQALGKRRGELITSLQFLGDYENLLTPPQAVLTEANQAAAKANMFVSGNPVGSGSSESLSMDDLPMNCSGNLWHLIVEACIARNLLDTSAYFWPGYVNACSNQTPCSVSKHMDGWSSLMKGSQLTPGLVDVLAATPASSLAEIEKIYEIAINGSDEEKISAATILCGASLVRGWNVQEHTLLFITNLLSPICPPNHTETENHLISQAPFLNVLLVGISSVDCVHIFSLHGLVPLLAAGLMLICEVFGSCVPDVSWTVKTEEKVSHCEVFSNAFTLLLRFWRFDFLPAEQVRSNAATPPLGSLFSPEFLLLVRNYRVASFGRSAKDSLKLKRLSKLLHFSKEPVFMDSFPKLNFWYQQHQECIASIRSGLVPGGPVHQIVDALLSMMFRKVNDGSEPSTPSTLGSSSSCGSGSALDDALMKLKVSAWDILKAIPFVLDASLNACAYGRVSTRELATGLKDLADFLPASLVTIASYFKAEVTRGIWKPAFMNGTDWPSPAANLSLVEQQIKEILAATGVDVPSLAVDGDSQATLPLPLAAFVSLSITYKLEKGTGRFLVLIAPALNALASGCPWPCMPILTSLWIQKVKRWSEYFVFKASGTVFHHNRDAVVQLLKSCFTSTLGLGSTGINNSGGIGALLGHGLVSQAAGGISPVAPGILYLRVYRSIGDIMFLNKEIMSILMLSVRDIANSELPKDNVKKQLKNGMKFGQVSLPRYMARVKHAALLGASLVWISGGSKLVQSLIGDTVPSWFLSADMLEQDGGESGVLVAMLRGYALAFFVMLSAAFAWGIDHYSVPPKRRARVIGLHLEFLASTLEGNTSLCCHCATWRTYVSGFVGLMVGCTPMWVREADVELLKRLSKGLRQLDEHELALRLLEIGGIGVMGAAAEMIIEIERRL
Length1339
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.08
Grand average of hydropathy0.153
Instability index44.94
Isoelectric point6.00
Molecular weight146930.28
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11651
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.13|      15|      19|     508|     525|       1
---------------------------------------------------------------------------
  508-  522 (30.59/20.80)	MNCSGNLWHLIVEAC
  528-  542 (30.54/12.70)	LDTSAYFWPGYVNAC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     220.06|      82|     361|     557|     668|       2
---------------------------------------------------------------------------
   62-  102 (37.29/ 9.20)	LVSHLFWNNHSPTAWKLLHSAASFNIipplLLISLLSTRIV.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  568-  616 (51.70/65.09)	.........................................psrelhpiayrlymellkqnvfmlqshiyspnyqkimesiddvlqlsqvysrkvcepgvvlvefvfsilwqlleaslddeglldhgpenkprwisrsnamsidepdcingmkteqkeglqrentamaieiiveflqnkmtlrllslvhrnmpshwgsfnhqmqllasnssilknlkhinadtllslmenihgfgsnecnttsklesnvvisagsqiyfagqyygsswsslwlpidliledaldggqvaafsaieiitglvkilhavngtmwhktflglwiaalrlvqrerdpnerpiprldtcmcmllsitthvvtniieeeeselieeadssptnrgknkqalgkrrgelitslqflgdyenlltppqavlteanqaaakanmfvsgnpvgsgsseslsmddlpmncsgnlwhliveaciarnlldtsayfwpgyvnacsnqtpcsvskhmdgwsslmkgsqltPGLVDVLAAtpasSLAEIEKIY.....EIAINGSDEEKISAATILCGA..SLVRGW
  629-  722 (131.06/81.16)	LLSPICPPNHTETENHLISQAPFLNV....LLVGISSVDCV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................hifslHGLVPLLAA....GLMLICEVFgscvpDVSWTVKTEEKVSHCEVFSNAftLLLRFW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.03|      13|     356|     489|     505|       3
---------------------------------------------------------------------------
  489-  505 (20.30/16.51)	SGNPVGSGSSeslsMDD
  846-  858 (24.73/11.03)	SSSSCGSGSA....LDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.77|      64|      77|     929|    1005|       5
---------------------------------------------------------------------------
  886-  951 (106.06/64.57)	AYGRVSTRELATGLKDLADF.LP.ASLVTIASYFKAEVTRGIW.......kpAFMNGTDWPSPAANLSLVEQQIK
  955- 1029 (96.71/71.18)	AATGVDVPSLAVDGDSQATLpLPlAAFVSLSITYKLEKGTGRFlvliapalnALASGCPWPCMPILTSLWIQKVK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11651 with Med33 domain of Kingdom Viridiplantae
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