<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11650

Description U-box domain-containing protein 33 isoform X2
SequenceMAVVNHVGGEIEEEPDQGVVDEAIYVAVSKDVKESKSNLIWAIQNSGGKKICILYVHVPATMIPLMGAKFPASSFKDQEVRAYRDIERQNMHKTLDEYLRICHRMGVRAEKLHIETDNIEKGILELISQQGIRKLIMGAASDKCYSRRMMDLKSKKAIYVCEQAPASCYIQFICKGHLIHTRDRSLDERNVEVASPLVQQVPNSVRSLRSQSITLGQNHRTDSINSVQELFRRAKSASDEQRPSNVDVPSPDDTARFSTPRNMRGTEVSSDESDRLSKTSPSGLSTCSDSAIEPALTPNSVAESSEIALELSLSHLVIEDLHHLSPPSVLDGGVNDTLYDQLEQAMSEAHNATRNAYQETFRRGKAEKEAIEAIRKAKASESLYTEELNLRKMAEEELKKEKEELENITSQRDKVQEELQLALDLKSSLESQLASSEVMVQELEQKIISAVELLQSYKNEREELQMQRDNALREAEELRKKQGDDSSSHVPQLFSEFSFSEIEEATRNFDPSLKIGEGGYGNIYQGILRHTEVAIKILHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLVCKDNTPPLSWQTRIRVAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLVSKLSDFGICRILSNYENSSNNSTQFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYAIDTGKLTSLLDPLAGDWPFVQAEQLARLALRCCEMNRKSRPDLHSDVWRILDSMRASSGGTNSFGLSSEGPHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLAHQSLVPNRALRSAIQDWLQSH
Length867
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.06
Grand average of hydropathy-0.453
Instability index52.69
Isoelectric point5.45
Molecular weight97094.47
Publications
PubMed=26259924

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11650
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     157.81|      45|      49|     611|     656|       1
---------------------------------------------------------------------------
  564-  614 (56.51/30.08)	.LITLIGACPEswSLVYEYL.P.NGSLEDRLVCKDNT...PPLswqTRIRvaaELCS
  615-  663 (69.73/42.58)	ALIFLHSSKPH..SIVHGDLKPsNIILDANLVSKLSD...FGI...CRILsnyENSS
  677-  708 (31.57/13.89)	TFVYM...DPE..FLASGELTP...........K.SDvysFGI.ilLRLL.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.51|      34|      53|     379|     413|       2
---------------------------------------------------------------------------
  354-  377 (21.17/10.11)	............RNA.....YQETFRRGKAEKEAIEAiRKA
  379-  413 (49.34/40.06)	ASESLYTEELNlRKM.....AEEELKKEKEELENITS.QRD
  434-  469 (42.99/29.40)	ASSEVMVQELE....qkiisAVELLQSYKNEREELQM.QRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.34|      16|      19|     240|     258|       3
---------------------------------------------------------------------------
  240-  258 (23.86/25.60)	EQRPSNVdvpSPDDTARFS
  262-  277 (27.48/18.07)	NMRGTEV...SSDESDRLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.54|      18|      19|     522|     539|       4
---------------------------------------------------------------------------
  522-  539 (31.92/20.26)	NIYQGILR.HTEVAI..KILH
  541-  561 (23.62/13.26)	NSMQGPLEfQQEVDVlsKLRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.36|      13|     209|     281|     295|       6
---------------------------------------------------------------------------
  281-  293 (22.72/18.40)	PSGLSTCSDSAIE
  298-  310 (20.64/ 7.50)	PNSVAESSEIALE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.65|      18|      19|     191|     208|       7
---------------------------------------------------------------------------
  184-  205 (23.39/12.89)	RSLdernVEVASPLVQQVPNSV
  206-  227 (24.27/13.63)	RSLrsqsITLGQNHRTDSINSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11650 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) INSVQELFRRAKSASDEQRPSNVDVPSPDDTARFSTPRNMRGTEVSSDESDRLSKTSPSGLSTCSDSAIEPALTPNSVAES
2) LSPPSVLDGGVNDTLYDQLEQAMSEAHNATRNAYQETFR
224
324
304
362










Molecular Recognition Features






MoRF SequenceStartStop




NANANA