<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11637

Description ATP-dependent DNA helicase Q-like 4A
SequenceMQQGQGNSAQGLQIPQLNWLQHANAHHNFSSQAKFLTSNFLFSIPTHKPSSNDGSGRFVLRQGQDIQRAQVEKAWHGLSSLQISSRNYVQPGKTVKVTSQFHEDRSATSFPGSYENDKIRHPDVTATPIVINHSSRVLDTSVNNHTKYASQTNKSAKCVPDDINADDDDILENIDVDQIVEKYQSSCTPQPSISKFPPITPMADKDNFARNGDINLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNVENLSSVQIAKLRQDRSQLNKQIQQLEKYIHSSNLDEERQKSHFSTTMAPPTSFVYETPQRNVISSGSNRYDGQAYTGNGTYGPSYQSSFLSADMCGMPSGPVEREPFIPKIIEVNYIEGSGDKRWSSRDFSWTKELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRHLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSIVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSLGAIEQSPMTSGYSRLNGTNSGRMLETNTENLLRMVSYCENDVDCRRLIQLVHFGEKFDSSTCQKTCDNCVKVTSFIEKDVTEIAKQLVELVKQTGQKVSASHLLEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRVLHHLVVEDFLAEEVKKSDFYGSVSSTLKVNEAKVQNVLFGGQRIILRFPSLVKASKPGKCDPTPAKGSLTSGKLNLPFDIPDQHQTEVDLNLSAKLYTALRMLRTALVREAGEGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKTKVSKYGDRLLETIEKTINEYYNMDKSSSGSKGSTDSTKRRRETNRDPDSNAEDDDDEALIKSTGRSKKRTVKRLIKKAEVYDSAEEDYYQGCLDEDLDNIENDALNKLAGTNVSGRVLPQWTAS
Length1157
PositionUnknown
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.07
Grand average of hydropathy-0.515
Instability index44.65
Isoelectric point7.07
Molecular weight129875.24
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11637
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     257.07|      81|     187|     614|     725|       1
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  632-  719 (139.97/162.34)	YCLSRMDCEKV......AEKLQ..ECGHKCafyhgsmDPAQR..AFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR...AGR
  781-  874 (117.09/72.76)	YCENDVDCRRLiqlvhfGEKFDssTCQKTC.......DNCVKvtSFIEKDVTEIAKQLVELVKQTGQKVSASHLLEVYRGSLSQMVKKHRHETVRlhgAGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.37|      14|     188|     394|     410|       2
---------------------------------------------------------------------------
  394-  407 (25.02/23.63)	LEVNNKRVFGNHSF
  412-  425 (25.35/12.21)	REVINATMSGCDVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     271.44|      96|     918|      36|     169|       3
---------------------------------------------------------------------------
   36-  169 (137.26/160.36)	LTS...NFLFSIPTHKPSSNDGSGRFVLRQGQDIQR.AQVEKAWHGLSSLQISSRNYVQP.GKTVKVT...sqfhedrsatsfpgsyendkirhpdvtatpivINHSSRVLDTSVNNhTKYASQTNKSakcvPDDiNADDDD
  953- 1088 (134.19/85.26)	LTSgklNLPFDIPDQHQTEVDLNLSAKLYTALRMLRtALVREAGEGVMAYHIFGNATLQQiSKRVPRTkeelldingisktkvskygdrlletiektineyynMDKSSSGSKGSTDS.TKRRRETNRD....PDS.NAEDDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.69|      20|     767|     252|     287|       6
---------------------------------------------------------------------------
  252-  273 (24.81/17.98)	NELLDnVENLSSVQIAKlRQDR
 1022- 1041 (33.88/14.63)	EELLD.INGISKTKVSK.YGDR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11637 with Med34 domain of Kingdom Viridiplantae
Unable to open file!