<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11636

Description uncharacterized protein LOC101503108 isoform X1
SequenceMDSNNWRPNQSAENNMDSSDWRGQLQPESRQRVVNKIMDTLKRHLPDSGQEGLFELWKIAQRFEEKIFTAATSQPDYLWKISLKMLTMEIKSHGTLANNIPSNQGGPSNKPPVPVNLNLMNSNNWRLNQGAEPNMDSSDWRGQLQPESRQRVVNKIMDTLKRHLPDSGQEGLFELRKIAQRFEEKIFTAATSQPDYLRKISLKMLTMDTKSQGTMTNNIPSNQGGPSNRPPYPR
Length234
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.06
Grand average of hydropathy-0.974
Instability index54.59
Isoelectric point9.58
Molecular weight26805.93
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11636
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     134.57|      18|      19|      14|      31|       1
---------------------------------------------------------------------------
   14-   31 (40.76/25.15)	NN.MDSSDWRGQLQPESRQ
   35-   50 (26.87/14.20)	NKiMDT..LKRHL.PDSGQ
  133-  150 (40.07/24.61)	PN.MDSSDWRGQLQPESRQ
  154-  169 (26.87/14.20)	NKiMDT..LKRHL.PDSGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     297.51|      80|     117|       1|     114|       2
---------------------------------------------------------------------------
    1-  114 (149.76/95.09)	MDSNNWRPNQSAEnnmdssdwrgqlqpesrqRVVnkimdtlkrhlpdsgqEGLFELWKIAQRFEEKIFTAATSQPDYLWKISLKMLTMEIKSHGTLANNIPSNQGGPSNKPPVP
  120-  233 (147.75/93.72)	MNSNNWRLNQGAEpnmdssdwrgqlqpesrqRVVnkimdtlkrhlpdsgqEGLFELRKIAQRFEEKIFTAATSQPDYLRKISLKMLTMDTKSQGTMTNNIPSNQGGPSNRPPYP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11636 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDSNNWRPNQSAENNMDSSDWRGQLQPESRQRVVNKIMDTLK
2) RKISLKMLTMDTKSQGTMTNNIPSNQGGPSNRPPYPR
3) SHGTLANNIPSNQGGPSNKPPVPVNLNLMNSNNWRLNQGAEPNMDSSDWRGQLQPESRQRVVNKIMDTLK
1
198
92
42
234
161










Molecular Recognition Features






MoRF SequenceStartStop




1) NRPPYPR
2) RKISLKMLTM
228
198
234
207