<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11625
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTSSEQWGTFLRQCLLHRIDATEFKSFTQLLLQRSPITEAPLLDVLLETRLATGIKWDPLLPLYIDCLCKMGVVQTSTVLNSLLKYSSIHDKPPSPNQEMVQSKQRRKCYTLMTDIRVVQDAMLSVSTGSAPKTFLEAIGIFTSIVDWVQAVVAWHNSHMDANHQTGGLMSSPDAVSLFESLGILLAALSGTAKGLQVLSADSHEGTLKIKLGQALSAYLPLCVEVSLPLRNRLDGLQKEFNLFGEPSSKALDVSMMDNVNVNALQFEDSVMDGPMINSRAGLYVYINAMLVGRPLVDDSMLLNFLSNRYGGHYQVLIEEIITATFDVLSNASYRSESSRTMFLFRSFLVNKLPAFIAAMLAASMVSLPMELCISHALSRLDPNTFPSFSQMFAMQSNTVLSDVRQEFLFACASHKLIPESSIERLLGENPMQTLPVGGPYHKEELVSQINANPERTEQLINEIESMEGNAGAIVGAITEVMHHLCDQKETMTLKNICNSLSRRPQALDVILLFRSAKQILQPLCALLDAWHWDEDQGESQPVYDEFGSILLLVLTFKFRYDLRPHDMGIGGSNSFVLRLLENGFCSQKLDDLSEKQNKNLGAWINALFMAEGISEETMSACSPQEFYLLVSTLFNQSLGACEAGKLEFETLKGGFEYLLEPFLLPSLILALNWLGNHIWETESDPSIPLKTLQSLVNPSSISGEAKEIHRTVLNITARSLEEQLKGIRARQPEDIKPILDALELCLSFHRSGSCHRSELESWTSHAPGGLLASIRSTFQSLVLWSTSPGMSMAPQTYTHRQLLAGIQIQGSARVLTTIIEELKLQTEAGSGDLALDVAATMICAPLAESFAVDQNSYSHHPVDPSKEPLPRCPILTLRGALFIQHENVPKLSEKDPLRAEVIVRLYRRVNALMTPPSQVPNLDMNNIIQNMQLGVGGPGQMDLEPSGPGGHDDNINQMLDNAAAAAAAGMDGSQNMGGMGNMGLESTGGGLDTSIDDVLNAADMAVGNPEFLDLDMEGLF |
Length | 1021 |
Position | Tail |
Organism | Aspergillus carbonarius (strain ITEM 5010) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.019 |
Instability index | 51.96 |
Isoelectric point | 4.96 |
Molecular weight | 112165.35 |
Publications | PubMed=28196534
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP11625
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 149.96| 35| 70| 914| 948| 1
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914- 948 (65.53/38.47) MTPPSQVPNLD..MNNIIQNMQLGVGGPGQMDLEPSG
960- 989 (50.58/28.04) LDNAAAAAAAG..MDG.SQNM....GGMGNMGLESTG
990- 1019 (33.84/16.36) .......GGLDtsIDDVLNAADMAVGNPEFLDLDMEG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 110.03| 26| 72| 412| 437| 6
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352- 370 (24.78/11.53) ....KL...P.AFIAAMLA.ASMVSLPM
373- 400 (39.59/22.97) CISHALsrLDPNTFPSFSQMFAMQSNTV
412- 437 (45.66/27.65) CASHKL..IPESSIERLLGENPMQTLPV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 117.16| 38| 38| 160| 197| 7
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160- 197 (62.64/40.15) MDANHQTGGL.MSSPDAVSLFESLGILLA.ALSGTAKGLQ
199- 238 (54.52/33.93) LSADSHEGTLkIKLGQALSAYLPLCVEVSlPLRNRLDGLQ
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