<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11604

Description "Mediator complex, subunit Med25, von Willebrand factor type A"
SequenceMAEKQLIVAVEGTAAMGPYWHTVVSDYLDKIIRCFCSGELNGQKTSTSNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFAGGGFNDAAIAEGLSEALMMFSVASNGNQTQQNVDGQRHCILVSASNPYPLPTPVYRPQIQNLEQTENIEAQTESRLSDAETVAKSFGQCSISLSVICPKQLSKLKAIFSAGKRNPRAPDPPVDNSRNPQFLVLISENFMEGRAAFSRPGVPSLPSNQSPVKMDMASVTSVTVPPPTSVPSVNGSMMARQPVSVGSVPTATVKVEPTTITSMGTGPGYPHIPSVPRAPSQAVPTLQTSSPSTTTQEVITSGDNVQEIKPSVSGMTQPLRPVPPAANVNILNNLSQARVMNSAALTGGSSIGLQSMGQTPVAMHMSNMISSGMASSVPPTQTVFSNGQSGMTSLTGSGALTGTAQVPPNSGLSSFASASSNMAGNSNIGISQPMGNVQGGVSMGQSVPGMSQGNVSGAQMVQSGVGMSQNMSGLGPSTVSSGTGTMIPTPGMSQQVQSNMQSLGVNNSSAASMPLSQQTSSALQSAQSKYVKVWEVMVIGVPQLLKRMGATYVQGPGRSQLVSQGQVSSQAPPNMAGGGFMG
Length620
PositionUnknown
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.04
Grand average of hydropathy-0.118
Instability index54.88
Isoelectric point8.42
Molecular weight64189.00
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11604
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     438.47|      76|      77|     385|     460|       1
---------------------------------------------------------------------------
  243-  297 (58.04/17.94)	......L.PS..NQSPV......KMDMASVTS......VTV..P.P.........PTSVPSvNGS.........MMARQPVSVGSVpTATVKVEPTT...................
  299-  383 (67.38/21.99)	........TSM.GTGPG......YPHIPS.VPRA..PSQAV..P.TlqtsspsttTQEVIT.SGDnvqeikpsvSGMTQ.........PLRPVPPAANvniLNNLSQArvmnSAAL
  385-  460 (135.62/51.64)	GGSSIGL.QSM.GQTPV......AMHMSNMISSG..MASSV..P.P.........TQTVFS.NGQ.........SGMTSLTGSGAL.TGTAQVPPNSG...LSSFASA....SSNM
  462-  498 (53.11/15.80)	GNSNIGIsQPM.G...............N.VQGGvsMGQSV..P...............................GMSQ....GNV.SG........................AQM
  499-  553 (66.83/21.76)	VQSGVGMsQNMsGLGP............STVSSG..TGTMI..PtP.......gmSQQV.....Q.........SNMQSL.................G...VNNSSAA....SMPL
  555-  618 (57.50/17.71)	QQTSSAL.QSA.QSKYVkvwevmVIGVPQLLKRM..GATYVqgP.G.........RSQLVS.QGQ........vS...............SQAPPNMA...GGGF...........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.68|      23|      29|     188|     210|       5
---------------------------------------------------------------------------
  188-  210 (40.03/23.90)	PKQLSKLKAIFSAGKRNPRAPD.P
  218-  241 (36.65/21.29)	PQFLVLISENFMEGRAAFSRPGvP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11604 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AFSRPGVPSLPSNQSPVKMDMASVTSVTVPPPTSVPSVNGSMMARQPVSVGSVPTATVKVEPTTITSMGTGPGYPHIPSVPRAPSQAVPTLQTSSPSTTTQEVITSGDNVQEIKPSVSGMTQPLRPVPPAANVNILNN
2) MAGNSNIGISQPMGNVQGGVSMGQSVPGMSQGNVSGAQMVQSGVGMSQNMSGLGPSTVSSGTGTMIPTPGMSQQVQSNMQSLGVNNSSAASMPLSQQT
3) NSAALTGGSSIGLQSMGQTPVAMHMSNMISSGMASSVPPTQTVFSNGQSGMTSLTGSGALTGTAQVPPNSGLSSFASA
234
460
379
371
557
456










Molecular Recognition Features






MoRF SequenceStartStop




NANANA