<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11603

Description "Mediator complex, subunit Med23"
SequenceMDQTQRSVAAAANSRTYQFHPARAAITDLFNLYLGRSSRQKADDSIREPPNKTQKRVLALNRELPPRNEQFLVDFEQLQTQFGDQDQLRSVTESVIISLVIQCCSHAPRAEFLLFALRSLCSVGYINWDTLLPSLLSSVSSAEMPVGQGSQGVSSVPSTSLSQSGIMPSTGVIANTSNFQSSNPVSTLTSVHGIGSPAPSSIEPSSGATLSPVKSSDISCNGQPSATRMNSSIRDNTISNLRQLCCKIILTGLECSLKPVTHAEIFHHMLNWLVNWDQRQQGNEECDGKSSRPDKALIEWLHSCLDVIWLLVEENKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILLQTTPNVSVEAVANLRYSPITYPSVLGEPLHGEDLAASIQKGSLDWERALRCIRHAIRSTPSPDWWKRVLVVASCYRGAQPPTPGAVFTSDMICEATIDRIVELLKLTNSEINCWQEWLVFSDIFFFLMKSGCIDFVDFVDKLGSRLTESDPHILRTNHVTWLLAQIIRVEHVMAALNNDSRKVETTRRILSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSNKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVMHWLSSGGVTELLPGANLQPNERLMVMREVSPLPISLLSGFSMNLCLKLVFQMEDSLFAGQVVPSIAMVETYTRLLLIAPHSLFRSHFSHLAQRNPALLSKHGVTLLVLEIINYRLLPLYRYQGKCKTLMYDITKIISALKGKRGDHRVFRLAENLCINLILSLRDFFSVKREGKGPTEFTETLNRITVITLAITIKTRGIADADHLLYLQTMLEQILATSQHTWSEKTLRYFPSLLRDALMGRVDKRGLAIQAWQQAETTVINQCTQLLSASADPNYVMTYISHSFPQHRQYLCAGAWILMQGHPENINSINLARVLREFSPEEVTANIYTMVDVLLHHIHMELQHSHSLQDLLIKTCSNLAFFVWTHELIPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKLYCVNRGPPEHWLYTGIFKRTDLQKALGNHLSWKDRYPTFFDDIPARLLPVIPLIVYRLIENDATESADRILAMYSLFLAYHPLRFSFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHIGSTNPAMCPPLEYFATLLLALVNNVIPPLNSNSRSGSMGDASNNSMRGPHNKTPATPQSGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQSSNGLHGASNGVGQCSVLPTSPSGGSTDSMSAGRSTPPVSGINTSSFVSRSGYTCQQLSCLFIQACGLLLAQLPPEFHLQLYTEASRIIKESWWLTDGKRSLGELDSAVSYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLEGTQVIIKNLRPVTSVAMLRIAFRIMGPLLPRLANAHSLFNKILSLLLTTLVDVFGKNSQTPVPVDASEITDLIDFLHHVIHYEGQGGPVQANSKPRPEVLALCGKAAESLRPDVQHLLSHLKPDINSSIYAATHPKLVQNPT
Length1607
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-0.072
Instability index47.28
Isoelectric point6.62
Molecular weight180020.75
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11603
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.51|      20|     967|     475|     496|       1
---------------------------------------------------------------------------
  475-  496 (30.68/27.93)	IDRIVELLKLTNSEINcwQEWL
 1445- 1464 (37.83/24.02)	IGNIVALLHSFFSNLP..QEWL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.71|      46|     180|     199|     246|       2
---------------------------------------------------------------------------
  199-  246 (74.81/53.04)	PS.SIEPSSGATLSPVKSSDIScnGQP.SATRMNSSIRDNTISNLRQLCC
  382-  429 (71.89/43.83)	PNvSVEAVANLRYSPITYPSVL..GEPlHGEDLAASIQKGSLDWERALRC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.62|      47|     338|     653|     780|       3
---------------------------------------------------------------------------
  656-  714 (65.32/101.73)	A.....QPACETVMHwlssgGVTELLPGANLQPNERlMVMREVSPLPISLLsgfsmnLCLKLVF
  780-  831 (74.30/60.49)	LplyryQGKCKTLMY.....DITKIISALKGKRGDH.RVFRLAENLCINLI......LSLRDFF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.81|      23|     360|     753|     779|       4
---------------------------------------------------------------------------
  523-  545 (40.88/23.46)	RLTESDPHILRTNHVTWLLAQII
  753-  775 (37.93/33.07)	HLAQRNPALLSKHGVTLLVLEII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.63|      16|     180|    1022|    1046|       6
---------------------------------------------------------------------------
 1022- 1046 (21.29/28.78)	CSNLAFFvwtheliplDILLLALID
 1206- 1221 (30.35/15.83)	CPPLEYF.........ATLLLALVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.54|      24|     540|     977|    1009|      12
---------------------------------------------------------------------------
  986- 1009 (44.60/40.02)	PEEVTAN.IYTMVDVLLHHIHMELQ
 1526- 1550 (40.94/18.81)	PVPVDASeITDLIDFLHHVIHYEGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.64|      37|     102|    1233|    1274|      16
---------------------------------------------------------------------------
 1233- 1274 (56.95/58.09)	SGSMGdaSNNSMRGPHNkTPatPQSGPANASEGQKAFYQIQD
 1338- 1374 (68.69/49.17)	SPSGG..STDSMSAGRS.TP..PVSGINTSSFVSRSGYTCQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11603 with Med23 domain of Kingdom Viridiplantae
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