<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11602

Description Uncharacterized protein
SequenceMAMKGLPIEQWRDYFRTANSDIFDIIDHAITVAALDCPKEFRLRRDQIAEKLFTCKFTRCSGCDRVELAVPEYGDDSDGGSGGGGCQGTTRFKREADEEEDGCEFFEAGGSKESKANSSRDDPLMNQIASNYSYGEAEALTDEIEEESMIIGEVYRIKELLLNSQDESDSVLLDSLRRLELMALTVDILKATGIGKAVNRVRKHSSKQIRHLAQTLIDGWKELVDEWVNATKAITEGTPESANPSVVDEEEEEGLPSPPLDIGAFFATQPTSIELSQFFDGMDDDENPRNSGEFIKNRDNRRKPSQENQNVSRRKQQTSSEANLRAKDERSQQMKRQEHVAKPNKPSSTNIGSGRPPKHDMEQKANIEPKLLNKSDKMTIPKKPLSSQQDWLFFNQKFKASDEERKLEATKRKLQERYQQAENAKRKRTIQVMELHDLPKQGSGHKNPFVKPGNHNRHWANGRR
Length464
PositionUnknown
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.985
Instability index55.51
Isoelectric point5.79
Molecular weight52645.06
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11602
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.75|      24|      26|     298|     323|       1
---------------------------------------------------------------------------
  298-  323 (34.81/27.20)	RDNRRKPSQENQNVSrrKQQTSSEAN
  327-  350 (40.94/25.28)	KDERSQQMKRQEHVA..KPNKPSSTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.09|      15|      21|      62|      79|       2
---------------------------------------------------------------------------
   62-   79 (24.76/25.36)	GCD...RVElavPEYGDDSDG
   85-  102 (23.33/14.58)	GCQgttRFK...READEEEDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.58|      13|      28|     253|     265|       4
---------------------------------------------------------------------------
  253-  265 (24.36/16.19)	EGL..PSPPLDIGAF
  280-  294 (20.22/12.05)	DGMddDENPRNSGEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.52|      22|      23|     385|     406|       5
---------------------------------------------------------------------------
  371-  392 (34.92/22.55)	LLNKSDKMTIPKKPLSSQQDWL
  393-  414 (33.59/21.42)	FFNQKFKASDEERKLEATKRKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11602 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ELSQFFDGMDDDENPRNSGEFIKNRDNRRKPSQENQNVSRRKQQTSSEANLRAKDERSQQMKRQEHVAKPNKPSSTNIGSGRPPKHDMEQKANIEPKLLNKSDKMTIPKKPLSSQQDWLFFNQKFKASDEERKLEATKRKLQERYQQAENAKRKRTIQVMELHDLPKQGSGHKNPFVKPGNHNRHWANGRR
2) TKAITEGTPESANPSVVDEEEEEGLPSPPLDIGAFFA
274
231
464
267










Molecular Recognition Features






MoRF SequenceStartStop




1) HKNPFVKPGNHNRHWANGRR
2) WLFFN
445
391
464
395