<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11601

Description Uncharacterized protein
SequenceMAVSIQVASPVWDSVMEQIKFAQDRNTDPLLWAVQLSSSLHSAGVSLPSIDLAHLLVSHICWDNHVPIAWKFLEKALIAKLVPPVLVLALLSSRVIPNRKLHPAAYRLYMELLRRHAFSLKSEINGPNYPKIMKSVDDVLHLSEIFGLQVSEAGLLLVEFVFSIIWQLLDASLDDEGLLELSPEKRSIWPTLTQDMEIDNPENFNEKRNEQHDVLCKGNTTMAIEIVGEFLQNKVTSRILFLARRNMPTHWGAFIQQLRVLAAQSMALRNSKHVTPDALLQLTSDTRKVLSRESKIISQEFHAVIGSGSLTSSSGQYHGTSSSGHWLPIDLFLEDAMDGSEVAATGAVESLTGLVKALQAVNGTTWHDTFLGLWIAALRLVQRERDISEGPVPRLDTCLCMLLSITPLAVANVVEEEESELIDENDCSPTDQTKEKQPQGRRRKDLISSLQMLSDYEALLIPPQSVRTVANQAAAKAIMFISGLTVGNGYYESMSINDMPMNCSGNMRHLIVEACIARNLLDTTAYAWPGYVNARANIPRSVPNQVPGWSSLMKGSLLTPTLINALIATPASCLAEIEKIYEIATKGSDDEKISAASILCGASLVRGWNVQEHTILFITFLLSPPVPADYSGSDSHLISYAPFLNVLLVGISSVDCVQIFSLHGLVPLLAGTLLPLCEVFGSIAPNVTWTLPTGEELTSHAVFSNAFTLLLRLWRFDHPPLEHVMGDAKPVVSQQSPEYLLLVRNSRLSDFGKSPQDRLRSKRLSKSLNVSLDCIFMDSFPKLKRWYQQHQECIASTLSGLVQGTTVHQIVDALLHMMFRKISRGGQSSATSGSSTSSASGTEDVSVRLKVPAWDILEATPYVLDAALTACAHGRLSPRELATGLKDLADFLPATLGTIVSYFSAEVTRGIWKPAFMNGTDWPSPAANLSVVEQQIKKILAATGVDVPSLAIGGNSPAMLPLPLAALVSLTITYKLDKASERFLILVGPALNSLAEGCPWPCMPIIASLWAQKVKRWSDFLVFSASRTVFHHSSDAVVQLLRSCFTSTLGLSPSTIYSNGGVGTLLGHGFGSHFSGGMSPVAPGILYLRVHRSIRDILFMTEEIVSLLMSSVRDIASSGLSREKLEKLKKAKFGLRYGQVSLGAAMTRVKLAASLGASLVWLSNGLSLVQSLIKETLPSWFIATHTQEQDDEVGGAVAMLGGYALAYFTLLCGAFAWGVDSTSTASKRRPNVLGAHLEFLASALDGKISLGCNYATWRAYVTGFLSLMVGCAQKWILDVDVDVLRRLSNGLRQWKEEELAMALLGLGGVGAMSAAAELIIEIGD
Length1324
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy0.159
Instability index45.57
Isoelectric point6.17
Molecular weight144220.81
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11601
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.70|      65|      77|     872|     938|       1
---------------------------------------------------------------------------
  872-  938 (107.69/71.93)	AHGRLSPRELATGLKDLADF.LPATLGTIVSYFSAEVtrGIWKPAFMNGTDWPSPAANLSVVEQQIKK
  951- 1016 (109.00/67.07)	AIGGNSPAMLPLPLAALVSLtITYKLDKASERFLILV..GPALNSLAEGCPWPCMPIIASLWAQKVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.01|      22|     124|     500|     521|       2
---------------------------------------------------------------------------
  500-  521 (42.00/27.44)	PMNCSGNMRHLIVEACIARNLL
  627-  648 (40.01/25.78)	PADYSGSDSHLISYAPFLNVLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.82|      45|     245|     788|     833|       5
---------------------------------------------------------------------------
  788-  833 (75.64/52.65)	QQHQECIASTLsGLVQGTT.VHQIVDALLHMMFRKISRGGQSSATSG
 1039- 1084 (78.18/50.06)	QLLRSCFTSTL.GLSPSTIySNGGVGTLLGHGFGSHFSGGMSPVAPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.95|      49|     613|     549|     602|      11
---------------------------------------------------------------------------
  549-  602 (69.98/64.52)	WssLMKG.....SLLTPTLINALIATPASCLAEiEKIYEIATKGSddEKISAASILCGA
 1161- 1214 (82.98/56.74)	W..LSNGlslvqSLIKETLPSWFIATHTQEQDD.EVGGAVAMLGG..YALAYFTLLCGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.06|      12|      20|      80|      91|      14
---------------------------------------------------------------------------
   80-   91 (20.02/10.23)	KLVPPV..LVLALL
  100-  113 (17.04/ 7.62)	KLHPAAyrLYMELL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.82|      21|     277|     837|     869|      16
---------------------------------------------------------------------------
    3-   24 (33.04/10.49)	VSIQVASPVWDsVMEQIKFAQD
  845-  865 (36.78/18.72)	VSVRLKVPAWD.ILEATPYVLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.15|      43|     829|     282|     324|      18
---------------------------------------------------------------------------
  282-  324 (71.91/51.21)	LTSDTRKV....LSRE..SKIISQEFHAVIGSGSLTSSSGQYHGTSSSG
 1108- 1156 (59.24/40.72)	LMSSVRDIassgLSREklEKLKKAKFGLRYGQVSLGAAMTRVKLAASLG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11601 with Med33 domain of Kingdom Viridiplantae
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