<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11599

Description Heat shock protein 70 family
SequenceMLTRNKNKALWLFFLFLSGIAVAAEDPKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTIFDVKRLIGRNFNDPEVQRDMKFLPFKIVNKDGKPYIQVKVKDEIKVFSPEEISAMILTKMKETAEAYLGKKIKDAVITVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDKKGEEKNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYSNDISNDNNALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSESLTRARFEELNMDLFKKTLGPVKRALEDANLKKSDIHEIVLVGGSTRIPKVQQMLKDLFDGKEPSKGINPDEAVAYGAAVQGGILSGEGGEGTNDILLLDVAPLSLGIETAGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIRVFEGERSLTKDCRELGKFDLTGIPPAPRGVPQIEVTFEVDANGILHVTAEDKAAKKAKSITITNDKGPVSQEEIDRMVQEAEEFAEEDRKVREKIDSRNKLESYIYSMRSTIDDKDKLADKIDSDDKEKIETTLKEALEWLDDNQNGGKEDFDEKLKEVEAVCNPVIKQVYEKSGGSSAGSQEEDEPTDEL
Length657
PositionUnknown
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.439
Instability index32.30
Isoelectric point5.05
Molecular weight72702.45
Publications









Function






Annotated function


GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11599
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.93|      25|      26|     556|     580|       1
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  556-  580 (42.48/28.87)	KVREKIDS..RNKLESYIYSMRSTIDD
  583-  609 (36.44/23.73)	KLADKIDSddKEKIETTLKEALEWLDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.06|      16|      16|     179|     194|       4
---------------------------------------------------------------------------
  179-  194 (27.61/17.38)	AQRQATKDAGTIA.GLN
  196-  212 (20.45/11.09)	ARIINEPTAAAIAyGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.09|      21|      26|      93|     117|       5
---------------------------------------------------------------------------
   70-   91 (29.15/15.17)	FtDTERLIGEAAKNQAALNAER
   94-  114 (36.94/25.89)	F.DVKRLIGRNFNDPEVQRDMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.19|      21|      26|     482|     502|       6
---------------------------------------------------------------------------
  482-  502 (37.01/28.58)	GKFDLTGIPPAPRGVPQIEVT
  509-  529 (32.18/23.76)	GILHVTAEDKAAKKAKSITIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.81|      10|      29|     128|     137|       8
---------------------------------------------------------------------------
  128-  137 (16.21/ 9.70)	YIQVKVKDEI
  160-  169 (15.60/ 9.06)	YLGKKIKDAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11599 with Med37 domain of Kingdom Viridiplantae
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