Description | Putative transcription cofactor |
Sequence | MDTVDWRSQMSLDSRKRIIAHLIQKLEKTIPFSGQSGLIELKQIAADYLRRISEKLHAILEGKFKKAAQDKGNKSEPSPTDSQSMQQQNQIHSQGQIIPILKESNQSQACQQLLPQNVQNNMASSGFQSGMPRPVNNFGGQNMQINISGFSQNSMGQGMPSHIYSIQPRQMQGVQQNNAGQGNALCSMQSGATRPLHQNPASASQQGNISSLSSQSHNIASVRKQSMNTLQSIVESSSQQANTSSLSSQSGASVRQQNMNPLEPNPHELKQQHLKQKQELEMLQSQSQQRQMQSQQYHQQVKQEFPTQEFHQYHQQVKQEFQTHNMPQTQQHQQQMNNVNDMKIRPGMAVIKPGVFPQHLPAAQRQFRPGSQFQVASPKYYSPKIDQQSRLTSISKPRTPLQSANSPFAVPSPSTPLAPSHMPVESEKPVPGTSTLSDAANIGRQQGTGVHAVSGPVKISTPGILASPLLADDTHDTASTRVVSSKSNITEQPPLERLIKAVETMPPVALGAAVSEIASVVIMNDSIAESAPGNRSRAAIGEDLGSMTKCHLRARKFITKDGMNGTRMRRYINAMPLE |
Length | 578 |
Position | Tail |
Organism | Corchorus olitorius |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.725 |
Instability index | 73.46 |
Isoelectric point | 9.77 |
Molecular weight | 63564.87 |
Publications |
Annotated function |
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GO - Cellular Component | nucleus GO:0005634 IEA:UniProtKB-SubCell |
GO - Biological Function | chromatin DNA binding GO:0031490 IEA:InterPro transcription coactivator activity GO:0003713 IEA:InterPro |
GO - Biological Process |
Binary Interactions |
Repeats | >MDP11594 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 87.96| 15| 15| 295| 309| 1 --------------------------------------------------------------------------- 269- 283 (19.72/ 6.62) LKQQHLKQK...QELEML 284- 300 (20.37/ 7.06) QSQSQQRQ.mqsQQYHQQ 301- 316 (25.33/10.46) VKQEFPTQE..fHQYHQQ 317- 334 (22.53/ 8.54) VKQEFQTHNmpqTQQHQQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 202.99| 30| 31| 202| 231| 2 --------------------------------------------------------------------------- 84- 112 (42.67/17.07) SMQ.QQN...............QIHS.QGQI......IPILKESNQSQACQQ 124- 175 (28.20/ 8.96) SSGfQSGmprpvnnfggqnmqiNISGFSQNSmgqgmpSHIYSIQPRQMQGVQ 178- 197 (30.84/10.44) NAG..QG...............N...............ALCSMQSGATRPLH 202- 231 (53.41/23.10) SAS.QQG...............NISSLSSQS......HNIASVRKQSMNTLQ 236- 263 (47.87/19.99) SSS.QQA...............NTSSLSSQS......G..ASVRQQNMNPLE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 66.98| 18| 20| 398| 415| 3 --------------------------------------------------------------------------- 402- 424 (28.65/13.39) QSANSPFAVPSP...STplapsHMPV 425- 442 (18.41/ 6.07) ES.EKP..VPGT...ST..lsdAANI 445- 469 (19.92/ 7.15) QQGTGVHAVSGPvkiST.pgilASPL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 57.60| 18| 32| 9| 27| 6 --------------------------------------------------------------------------- 9- 26 (29.03/22.67) QMSLDSRKRIIAHLIQKL 35- 52 (28.57/16.40) QSGLIELKQIAADYLRRI --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) ASPKYYSPKI 2) RMRRYIN 3) SHIYSIQP | 376 567 161 | 385 573 168 |
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