<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11594

Description Putative transcription cofactor
SequenceMDTVDWRSQMSLDSRKRIIAHLIQKLEKTIPFSGQSGLIELKQIAADYLRRISEKLHAILEGKFKKAAQDKGNKSEPSPTDSQSMQQQNQIHSQGQIIPILKESNQSQACQQLLPQNVQNNMASSGFQSGMPRPVNNFGGQNMQINISGFSQNSMGQGMPSHIYSIQPRQMQGVQQNNAGQGNALCSMQSGATRPLHQNPASASQQGNISSLSSQSHNIASVRKQSMNTLQSIVESSSQQANTSSLSSQSGASVRQQNMNPLEPNPHELKQQHLKQKQELEMLQSQSQQRQMQSQQYHQQVKQEFPTQEFHQYHQQVKQEFQTHNMPQTQQHQQQMNNVNDMKIRPGMAVIKPGVFPQHLPAAQRQFRPGSQFQVASPKYYSPKIDQQSRLTSISKPRTPLQSANSPFAVPSPSTPLAPSHMPVESEKPVPGTSTLSDAANIGRQQGTGVHAVSGPVKISTPGILASPLLADDTHDTASTRVVSSKSNITEQPPLERLIKAVETMPPVALGAAVSEIASVVIMNDSIAESAPGNRSRAAIGEDLGSMTKCHLRARKFITKDGMNGTRMRRYINAMPLE
Length578
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.04
Grand average of hydropathy-0.725
Instability index73.46
Isoelectric point9.77
Molecular weight63564.87
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11594
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      87.96|      15|      15|     295|     309|       1
---------------------------------------------------------------------------
  269-  283 (19.72/ 6.62)	LKQQHLKQK...QELEML
  284-  300 (20.37/ 7.06)	QSQSQQRQ.mqsQQYHQQ
  301-  316 (25.33/10.46)	VKQEFPTQE..fHQYHQQ
  317-  334 (22.53/ 8.54)	VKQEFQTHNmpqTQQHQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     202.99|      30|      31|     202|     231|       2
---------------------------------------------------------------------------
   84-  112 (42.67/17.07)	SMQ.QQN...............QIHS.QGQI......IPILKESNQSQACQQ
  124-  175 (28.20/ 8.96)	SSGfQSGmprpvnnfggqnmqiNISGFSQNSmgqgmpSHIYSIQPRQMQGVQ
  178-  197 (30.84/10.44)	NAG..QG...............N...............ALCSMQSGATRPLH
  202-  231 (53.41/23.10)	SAS.QQG...............NISSLSSQS......HNIASVRKQSMNTLQ
  236-  263 (47.87/19.99)	SSS.QQA...............NTSSLSSQS......G..ASVRQQNMNPLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.98|      18|      20|     398|     415|       3
---------------------------------------------------------------------------
  402-  424 (28.65/13.39)	QSANSPFAVPSP...STplapsHMPV
  425-  442 (18.41/ 6.07)	ES.EKP..VPGT...ST..lsdAANI
  445-  469 (19.92/ 7.15)	QQGTGVHAVSGPvkiST.pgilASPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.60|      18|      32|       9|      27|       6
---------------------------------------------------------------------------
    9-   26 (29.03/22.67)	QMSLDSRKRIIAHLIQKL
   35-   52 (28.57/16.40)	QSGLIELKQIAADYLRRI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11594 with Med15 domain of Kingdom Viridiplantae
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