<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11593

Description Putative transcription cofactor
SequenceMENPNPSPTQPTMNTVDWRSQLSLDYRKKIMTLLIKKLEQTIPFSGQRGLIELKKFAIKLEHKIFADSTSQPDYLKRVSDKMRGIEMIKMKKTAQLDTGNNSEPPCAGSQGMQQQQNQIHSQGQTIHIPQESNQSQACQQLLPQNVQNNMAPSGFQSGMPPVSCQTQNPIPNFGGQNISGISQNSTGQGMPSHIYSIQQRQMQGVQQSMNLQGSVPKMQNNAGQGNALCSMQNGTAPRPLHQNPASASQQANISSLSSQSHNGASVRQQNMNTLQSIVASSTSQQANTSSLSSQSGVNVPQQNMNPIQSNLYELRQQYLKQKQEWQMLQSQSQQRQMQSQQYYQQVKQEFPTQEFQTRLMPQAQQYYHQQVKQEFPTQEFQTHHMPQTQQHQQMNNVNDMKIRPGMGVKPGVFPQHLPAGQRHQQFRPGSQFPISSPDQRLQVASPKHSSPKVDQQRLLTSIAKTRTPLQSANSPFAVPSPSTPLAPLPMPGESEKPVPSTSTLSDAANTGHQQGTGVHAVSGPVKINTPGISALPLLADDTHDTASTPAVPSKSNSTEQPPLERLINAVQSMSPVALRAAVSDIASVVIMSDSIAESAPGYRSRAAIAAAATSGGDTTGAASDQRQPWQLRLDLDSRLRVVNRMMDLLKSYKPTRLDKLSQEELDEVMQKELDEVSQKELDKLSLEELDEVLQEELNELRLSQEELSQFEELEELSQEILNKLRRISVTFEEKIYSGATSQSDYLRKITNKMLCMERKSKQAALHLHAAKRQKIMALRNKKFNDTSNQHQLKYYQFLEE
Length800
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.04
Grand average of hydropathy-0.788
Instability index65.26
Isoelectric point8.94
Molecular weight89238.31
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11593
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     145.12|      23|      23|     340|     362|       1
---------------------------------------------------------------------------
  110-  130 (30.37/10.07)	.QGM.QQ........QQNQIHSQG.QTIHIPQ
  340-  362 (47.04/19.64)	QQYY.QQ........VKQEFPTQEFQTRLMPQ
  364-  387 (43.03/17.34)	QQYYhQQ........VKQEFPTQEFQTHHMPQ
  388-  415 (24.69/ 6.81)	TQQH.QQmnnvndmkIR...PGMGVKPGVFPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     203.04|      30|      30|     247|     276|       2
---------------------------------------------------------------------------
  156-  180 (29.13/ 8.68)	...Q.......SGMPPVSCQTQNPiPNFGGQNIS...G
  181-  213 (36.45/12.66)	ISQNstgqgmpSHIYSIQQRQMQG.V...QQSMN.LQG
  222-  243 (33.29/10.94)	AGQG.......NALCSMQ....NG.TAPRPLH....QN
  247-  276 (53.93/22.15)	ASQQ.......ANISSLSSQSHNG.ASVRQQNMNTLQS
  282-  309 (50.23/20.14)	TSQQ.......ANTSSLSSQS..G.VNVPQQNMNPIQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.64|      23|      23|     658|     680|       3
---------------------------------------------------------------------------
  658-  680 (40.09/26.76)	DKLSQ.EELDEVMQKELDEVSQKE
  682-  704 (39.23/26.03)	DKLSL.EELDEVLQEELNELRLSQ
  705-  723 (19.32/ 9.20)	EELSQfEELEELSQEILNK.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     233.76|      52|      52|     498|     549|       4
---------------------------------------------------------------------------
  419-  451 (29.43/10.83)	..........AGQRH..QQfrpGSQ...FPIS..SPdqrL..QVASP...........KH...SSP
  453-  496 (63.71/31.77)	VDQQRLLTSIAKTRTplQS...ANS..PFAVP..SP........STP.LAPLPMPGE......SEK
  498-  549 (88.64/47.00)	VPSTSTLSDAANTGH..QQ...GTG..VHAVS..GP...V..KINTPGISALPLLADDTHDTASTP
  551-  600 (51.98/24.60)	VPSKS......NSTE..QP...PLErlINAVQsmSP...ValRAAVSDIASVVIMSDSIAESA..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.79|      15|      21|      37|      55|       5
---------------------------------------------------------------------------
   15-   29 (24.59/ 8.48)	TVDWRSQLSLDYRKK
   41-   55 (27.20/20.56)	TIPFSGQRGLIELKK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11593 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EMIKMKKTAQLDTGNNSEPPCAGSQGMQQQQNQIHSQGQTIHIPQESNQSQACQQLLPQNVQNNMAPSGFQSGMPPVSCQTQNPIPNFGGQNISGISQNSTGQGMPSHIYSIQQRQMQGVQQSMNLQGSVPKMQNNAGQGNALCSMQNGTAPRPLHQNPASASQQANISSLSSQSHNGASVRQQNMNTLQSIVASSTSQQANTSSLSSQSGVNVPQQNMNPIQSNLYE
2) QVKQEFPTQEFQTHHMPQTQQHQQMNNVNDMKIRPGMGVKPGVFPQHLPAGQRHQQFRPGSQFPISSPDQRLQVASPKHSSPKVDQQRLLTSIAKTRTPLQSANSPFAVPSPSTPLAPLPMPGESEKPVPSTSTLSDAANTGHQQGTGVHAVSGPVK
3) TPGISALPLLADDTHDTASTPAVPSKSNSTEQPPLERLINAV
86
370
529
313
526
570










Molecular Recognition Features






MoRF SequenceStartStop




1) LKYYQFLEE
792
800