<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11591

Description Uncharacterized protein
SequenceMETVDWRTQLPPESRSRIVNKIMDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAASSQSDYLRRISLKMLTMETKSQNTMPNPGSNSKPPDPGSQGMQNQVHSQGQSIPIPLQSNQPQARQQMLPHNVPNNMASAGVQTSAGLQSGMPLTQNSIPNVGQNSNMQNISGISQNSMGQGMTSNIYANQQRQMQGRQQVLPQQQQQQQQQQQLYHQQQLQQQIMKQKIQPGNLQPSLMPSHMQQQQNLLPTNQLQSGQQSGMQTSSVMQPSAMQSTPLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQAAGPGIHQQLTPSTQQSMMPQQHQQPPPSQQQQQQQQQQQQQQQPHMMGQQTNAANIQQNQLIGQQSSIGDMQQQRLLGQPNNLPNMQQQQQQQLMAQQNNISNIHQQQLGPQGNISGLQQQQLMGTQSGNSSMQTNQQSLHMLPQSKVPLQQTQQNAPNMLPAQGQTSQQQQMMSQMQSQSSQLQQQLGLQQQPNQLQRDMAQRLQASGQASSSLLQSQNLIDQQKQLYQSQRAVPETSSTSLDSTAQTGQANGGDWQEEVYQKIKSMRDHYLPEINEMHQKISAKLEQQDSLSQPQQKSDQLEKLKIFKSMLDRIIGFLSVSKANVLPTYKDKLSSYEKQIVNFISSNRPRKPSTMQQGQLPPPHMHSMQQPQPQINQTQSHDNQMNPQLQSVNLQGSVPTMQNNMTGLQHNSLSSLPGVSTAQQTMLNSLQPGSNLDSGQGNALGSMQQVATGPLQQNPGMGVKPGVFQQHLPGGQRQSYPHQQLKPGSQYPISSPQLLQTASPQMPQHSSPQVDQQSLLTSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPVPGTSSLSNAANVGHQQGTGVQAVSQSLAIGTPGISASPLLAEFTGADGTHANALATVSSKSNITEQPLERLMKAVKSMSPVALGASVSDIGSVVSMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGMSGTKKMRRYTSAMPLNVVSSAGSMNDSFKQLTGSETSELESTATSSVKRPRIEANHALLEEIREINQRLIDTVVDISDEDVDPTAAAANVDGSEGTIVKCSFSAVALSSNLKSQYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVSKEYEDLSVKAKSRFSISLRTLSQPMSLGEIARTWDICARAVISEHAQQSGGGSFSSKYGTWENCLSAA
Length1227
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.03
Grand average of hydropathy-0.760
Instability index73.25
Isoelectric point9.20
Molecular weight134175.71
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11591
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     505.79|      52|      89|     192|     243|       1
---------------------------------------------------------------------------
  105-  141 (41.62/ 6.09)	QG..............QSIPI.PLQS...NQPQ...A..........................RQQML..........PH...NV...PNNMAS....aGVQTS
  192-  243 (104.32/29.47)	QG............RQQVLPQ.QQQQ...QQQQ...QQ....LYHQQ....QL..........QQQIMKQK.....IQPG...NL..QPSLMPS.....HMQQQ
  244-  283 (46.16/ 7.78)	Q...............NLLPT.NQLQ...SGQQ...SG.............................MQTS...svMQPS...AM..QSTPLPG.....LQQNQ
  284-  333 (52.76/10.25)	QS............S....LQ.QSTQsmlQQHQ...QS....VLRQQ....QQ..........PQ....QA.....AGPGihqQL..TPSTQQS.....MMPQQ
  334-  386 (65.55/15.02)	..............HQQPPPS.QQQQ...QQQQ...QQ.......QQ....QQ..........QPHMMGQQtnaanIQQN...QLigQQSSI.G.....DMQQQ
  389-  457 (53.91/10.67)	LG............QPNNLPN.MQQQ...QQQQlmaQQnnisNIHQQ....QLgpqgnisglqQQQLMGT.......QSG...N.....SSMQTnqqslHMLPQ
  467-  513 (53.29/10.44)	QN............APNMLPA.QGQT...SQQQ...QM....MSQMQsqssQL..........QQQLGLQQ......QPN...QL..QRDM.............
  568-  611 (42.74/ 6.51)	DW............QEEV..Y.QKIK...SMRD...HY....LPEIN....EM..........HQKI.SAK.....LEQ........QDSL..S.....QPQQK
  622-  686 (45.45/ 7.52)	KSmldriigflsvsKANVLPTyKDKL...SSYE...KQ....IVNFI....SS..........NRPRKPST.....MQQG...QL..PPPHMHS.....MQQPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     254.44|      44|      44|     697|     740|       2
---------------------------------------------------------------------------
  697-  735 (64.43/23.42)	...........NQMNP..QLQS..VNL...QG.SVPTMQNNMTG.LQH.NSLS...SLPGVST
  736-  777 (42.55/12.58)	AQ..QTM...lNSLQP.....G..SNLdsgQGnALGSMQQVATGpLQQ.N........PGMGV
  778-  809 (46.57/14.57)	KP..GVF....QQHLPggQRQS..YPH...QQ.LKP.......G........S...QYP.ISS
  810-  858 (52.06/17.29)	PQllQTA...sPQM.P..QHSSpqVDQ...QS.LLTSISKTGTP.LQSaNSPF...VVPSPST
  861-  908 (48.83/15.69)	AP..SPMpgesEKPVP..GTSS..LSN...AA.NVGHQQG..TG.VQA.VSQSlaiGTPGIS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.37|      11|      71|      78|      88|       3
---------------------------------------------------------------------------
   78-   88 (23.29/10.65)	QNTMPNPGSNS
  152-  162 (21.09/ 8.82)	QNSIPNVGQNS
  172-  181 (18.98/ 7.05)	QNSMGQ.GMTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.78|      63|      71|    1021|    1091|       4
---------------------------------------------------------------------------
 1021- 1091 (93.49/75.80)	AMPLNVVSSAGSM.NDSFKQLTGSetSELESTATSSVKRP....R..IEANHALLEEIreinqrLIDTV.VDISDEDVD
 1094- 1164 (91.30/56.39)	AAAANVDGSEGTIvKCSFSAVALS..SNLKSQYMSAQMSPiqplRllVPTNYPNCSPI......LLDKFpVEVSKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.55|      40|     229|     930|     982|       5
---------------------------------------------------------------------------
  519-  562 (55.95/22.47)	ASGQAS............sslLQSQNLIDQQkQLYQSQRAVPETSSTSLD.STAQTG
  930-  964 (43.45/20.75)	.....................VSSKSNITEQ.PLERLMKAVKSMSPVALGaSVSDIG
  977- 1015 (23.15/20.31)	APGNGSraavgedlvamtkcrLQARNFITQD.G....MSGTKKM.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.17|      10|      19|      41|      54|       6
---------------------------------------------------------------------------
   41-   54 (11.14/22.54)	LRKIAVrfeeKIFT
   63-   72 (17.03/13.54)	LRRISL....KMLT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11591 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IVNFISSNRPRKPSTMQQGQLPPPHMHSMQQPQPQINQTQSHDNQMNPQLQSVNLQGSVPTMQNNMTGLQHNSLSSLPGVSTAQQTMLNSLQPGSNLDSGQGNALGSMQQVATGPLQQNPGMGVKPGVFQQHLPGGQRQSYPHQQLKPGSQYPISSPQLLQTASPQMPQHSSPQVDQQSLLTSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPVPGTSSLSNAANVGHQQGTGVQAVSQSL
2) KQLYQSQRAVPETSSTSLDSTAQTGQANGGDWQEEV
3) METVDWRTQLPPESRSRIVNKIMDTLKRHLPFSGQE
4) MRDHYLPEINEMHQKISAKLEQQDSLSQPQQKSDQLEK
5) RRISLKMLTMETKSQNTMPNPGSNSKPPDPGSQGMQNQVHSQGQSIPIPLQSNQPQARQQMLPHNVPNNMASAGVQTSAGLQSGMPLTQNSIPNVGQNSNMQNISGISQNSMGQGMTSNIYANQQRQMQGRQQVLPQQQQQQQQQQQLYHQQQLQQQIMKQKIQPGNLQPSLMPSHMQQQQNLLPTNQLQSGQQSGMQTSSVMQPSAMQSTPLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQAAGPGIHQQLTPSTQQSMMPQQHQQPPPSQQQQQQQQQQQQQQQPHMMGQQTNAANIQQNQLIGQQSSIGDMQQQRLLGQPNNLPNMQQQQQQQLMAQQNNISNIHQQQLGPQGNISGLQQQQLMGTQSGNSSMQTNQQSLHMLPQSKVPLQQTQQNAPNMLPAQGQTSQQQQMMSQMQSQSSQLQQQLGLQQQPNQLQRDMAQRLQASGQASSSLLQ
654
538
1
580
64
900
573
36
617
529










Molecular Recognition Features






MoRF SequenceStartStop




NANANA