<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11590

Description Uncharacterized protein
SequenceMAVVSPVPAATAIARGVNSVRFLDLRPPGIMSGRREIVEEPVARIIEEKIYVAVGKEVEKYKSVLFWALQNSGGKGICIIHVHQPAKMIPVSEMGTKFPANKLKEKEVKAYWEFERQEMQKTLDKYLMLCFQRGVQAEKLYIEMDSIEKGILEMISENGIRILVMGGAADKHSSKKLVDLKSKKAIFVRDHAPSSCHTIQFLCKGLLIFTRKLSLDATDREVASSSLPATPNLESRENHLKSQSVILRQTSQAEPSTSTPELRRAISENVYGRVGSVMGFTSADGNGGLSTPQSRFDAEGSSDEWDGLSRRSPHSSALSSCSSSGMADAALVPYTGTEVNENGIDSSAVIQAKENFHPSSPPSVLDGTMDDTLYDQLHQVMAEAANSRREAFEEAVRRAKAEKDALEAIRRVKASEILYRQELKQREEIEEALAREKEELDKMKNQRDEVMVELQNALEQKSSLEKQIVESEKVVKELEEKIISAVELLQNYKQERDELQMERDNALREAEELRKSRAETSGTHIPQFFTEFSFSEIEEATHNFDPSLKIGEGGYGSIYKGLLRHITVAIKMLHSNSLQGPSEFQQEVDVLSKMRHPNLVTLIGACPEAWTLIYEYLPNGSLEDRLSCRDNSPPLSWQTRIRIATELCSVLIFLHSSKPHGIVHGDLKPANILLDANFVTKLSDFGICRLLSNNTTVCCRTDPKGTFAYMDPDFLSTGEITPKADVYSFGIILLRLLTGKQALGITKEVQYALDNGNLKNILDPLAGDWPFVQAEQLANLALRCCEMNRKSRPDLSTDVWRVLEPMRASCGGSSAFHLGSEERCQPPHYFICPIFQEVMQDPHVAADGFTYEAEALRGWLDSGHDTSPMTNIKLSHCNLVPNLALRSAIQEWLQQN
Length896
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.372
Instability index50.63
Isoelectric point5.65
Molecular weight100076.72
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11590
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     318.55|      94|     102|     223|     318|       1
---------------------------------------------------------------------------
  155-  213 (29.01/10.61)	............................................ISEN..GiRI.LVMG.GAADkhSSKKLVDLKSKkaiFvrDhAPSSCHTIQFLCKgLLIFTRKL
  223-  318 (153.97/92.88)	ASSSLPATPNLESRENHLKSQSVIlrQTSQA.EPSTSTPELRRAISENVYG.RVGSVMGFTSAD..GNGGLSTPQSR...F..D.AEGSSDEWDGLSR.RSPHSSAL
  327-  418 (135.57/76.54)	ADAALVPYTGTEVNENGIDSSAVI..QAKENfHPSSPPSVLDGTMDDTLYD.QLHQVMAEAANS..RREAFEEAVRR...A..K.AE..KDALEAI.R.RVKASEIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.18|      24|      72|     419|     442|       2
---------------------------------------------------------------------------
  419-  442 (38.61/23.85)	YRQ...ELKQ.REEIEEALAREKEELDK
  465-  491 (27.19/14.73)	EKQiveSEKV.VKELEEKIISAVELLQN
  492-  515 (33.37/19.67)	YKQ...ERDElQMERDNAL.REAEELRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.82|      39|     101|     742|     783|       3
---------------------------------------------------------------------------
  742-  783 (54.09/55.10)	ALGITKEVQyALdNGNLKNILD..PLAgDWPFVQAEQLANLALR
  846-  886 (67.73/49.67)	ADGFTYEAE.AL.RGWLDSGHDtsPMT.NIKLSHCNLVPNLALR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11590 with Med32 domain of Kingdom Viridiplantae
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