<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11588

Description Uncharacterized protein
SequenceMATDDTIYVAVGEVIEENELTLFWALRNLNPLKVCILHVHQRSKMISSIAGNLDGIMFDQQELRGLEEVGKDMMHRIMDDYLLLCSQAGVRAEKLYIQRDEVAKGIVELIHRHNIKKLVMGAAADEHFSEEMWLMSEKAQYVNENAPNSCQIWFICREHLIYTRSETGQSSNARSPSGSSYMTSSSENMFEEREESECELEPFVLLRSRDDCDSLSMPNVLNMEGSSNDQIYDQLEQALQEAETSNRKAFEESERRIKAEMNAVNAMRQAKAFERLYNNCKRETETALAKQKEELEKIKRQRDEERLVTVEQKSILESQAANSDHRMKQLEDKLSSAMEQLKVIQKERDELQVELENTRKVTEELFRKEAEETSSTRQLQLVYHDQLSVSSDIHDATLDQLSICQKEKDELLVELENTRKMIEELLRKQAEETSNPHLQQPFIEFTLSEIQEATEDFHPRFKIAAGNRGSVYYRCFLRHTEVAIKVEDLSKSRHPNLVTLIGACPEIWALIYEYLPNGSLEDRLMNCEDDTPPLSWQTRIHIATELCYTLMFLHSSKPQSLVHGNLKPGNILLDANFGCKLSDFGACRALSLLANTSNMTESSNAHPYLDPDFRNTRRISHSLDLYPFGIILLQLLSGRSSQGIAESARSALLNGGNLNSFLDSSAGNWPYQVAQLTHLAIRCCEINRSRRPDLASEVLEVLKTMKTSSGASSSFLDESDEDNREPPSYFLCPILQEVMSDPHVAADGHTYELTALQEWLARHNTSPLTNLRLEHQDLVPNYALRSAIQEWQQCR
Length795
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.534
Instability index54.52
Isoelectric point5.08
Molecular weight90926.42
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11588
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     245.68|      57|      59|     339|     397|       1
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  293-  331 (37.46/19.64)	...............EELEKIKRQRDEERLVTVEQKSILE...SQAAN......SDHRMKQLE.....
  332-  385 (75.93/48.41)	.....DKLSSA...mEQLKVIQKERDELQVELENTRKVTEELFRKEAE......ETSSTRQLQLVYHD
  387-  444 (83.15/60.28)	LSVsSDIHDAT...lDQLSICQKEKDELLVELENTRKMIEELLRKQAE......ETSNP.HLQQPFIE
  445-  498 (49.15/25.69)	FTL.SEIQEATedfhPRFKIAAGNRG..........SVYYRCFLRHTEvaikveDLSKSRHPNLV...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.82|      35|     380|     198|     232|       2
---------------------------------------------------------------------------
  150-  190 (46.13/31.97)	CQIwficrEHLIYTRSETGQSSnAR.SPSGSSYMTSSSENMF
  198-  232 (62.78/46.55)	CEL.....EPFVLLRSRDDCDS.LS.MPNVLNMEGSSNDQIY
  579-  608 (45.90/31.76)	CKL.....SDF......GACRA.LSlLANTSNMTESSNAHPY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.25|      43|     511|      16|      59|       3
---------------------------------------------------------------------------
   16-   59 (72.38/46.97)	EENELTLFWALRNLNPLKVC..ILHVHQrSKMISSIAGNL..DGIMFD
  528-  574 (68.87/40.29)	EDDTPPLSWQTRIHIATELCytLMFLHS.SKPQSLVHGNLkpGNILLD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11588 with Med32 domain of Kingdom Viridiplantae
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