<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11587

Description "Mediator complex, subunit Med23"
SequenceMDQTQRSVAAAANSRTNKTQKRVLALNRELPPRNEQFLVDFEQLQTQFGDQDQLRSVTESVIISLVIQCCSHAPRAEFLLFALRSLCSVGYINWDTLLPSLLASVSSAEMPAGQGSQGVSSVPSTSLSQSGIMPSTSVIANTSNFQSSNPVSTLTSVHGIGSPAPSSIEPSSGATLSPVKSSDISCNGQPSATRMNSSIRDNTISNLRQLCCKIILTGLECSLKPVTHAEIFHHMLNWLVNWDQRQQGNEECDGKSSRPDKALIEWLHSCLDVIWLLVEENKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILLQTTPNVSVEAVANLRYSPITYPSVLGEPLHGEDLAASIQKGSLDWERALRCIRHAIRSTPSPDWWKRVLVVASCYRGAQPPTPGAVFTSDMICEATIDRIVELLKCLSNYFLLALPFVNSSGLGSRLTESDPHILRTNHVTWLLAQIIRVEHVMAALNNDSRKVVSKCLNGKVETTRRILSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSNKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVMNWLSSGGVTELLPGANLQPNERLMVMREVSPLPISLLSGFSMNLCLKLVFQMEDSLFAGQVVPSIAMVETYTRLLLIAPHSLFRSHFSHLAQRNPALLSKHGVTLLVLEIINYRLLPLYRYQGKCKTLMYDITKIISALKGKRGDHRVFRLAENLCINLILSLRDFFSVKREGKGPTEFTETLNRITVITLAITIKTRGIADADHLLYLQTMLEQILATSQHTWSEKTLRYFPSLLRDALMGRVDKRGLAIQAWQQAETTVINQCTQLLSASADPNYVMTYISHSFPQHRQYLCAGAWILMQGHPENINSINLARVLREFSPEEVTANIYTMVDVLLHHIHMELQHSHSLQDLLIKTCSNLAFFVWTHELIPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKLYCVNRGPPEHWLYTGIFKRTDLQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLIENDATESADRILAMYSLFLAYHPLRFSFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHIGSTNPAMCPPLEYFATLLLALVNNVIPPLNSNSRSGSMGDASNNSMRGPHNKTPATPQSGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQSSNGLHGASNGVGQCSVLPTSPSGGSTDSMSAGRSTPPVSGINTSSFVSRSGYTCQQLSCLFIQACGLLLAQLPPEFHLQLYTEASRIIKESWWLTDGKRSLGELDSAVSYALLDPTWASQDNTSTAIVFKDTSG
Length1408
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-0.075
Instability index48.31
Isoelectric point6.75
Molecular weight157456.02
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11587
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.85|      17|     121|      83|     110|       1
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   83-  101 (27.88/19.30)	LRSLCSVgyINWDTLLPSL
  207-  223 (30.97/13.14)	LRQLCCK..IILTGLECSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     201.77|      64|     102|    1189|    1257|       3
---------------------------------------------------------------------------
 1189- 1257 (100.76/75.26)	SGSMGdaSNNSMRGPHNkTPatPQSGPANASEGQKAFYQIQD.PGTYTQ...LVLETAVIEI.LSLPVSASQIV
 1294- 1362 (101.01/60.38)	SPSGG..STDSMSAGRS.TP..PVSGINTSSFVSRSGYTCQQlSCLFIQacgLLLAQLPPEFhLQLYTEASRII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.68|      24|     349|     706|     736|       4
---------------------------------------------------------------------------
  469-  492 (42.81/20.12)	SRLTESDPHILRTNHVTWLLAQII
  708-  731 (39.87/26.62)	SHLAQRNPALLSKHGVTLLVLEII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.63|      16|     182|     978|    1002|       9
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  978- 1002 (21.29/30.15)	CSNLAFFvwtheliplDILLLALID
 1162- 1177 (30.35/16.69)	CPPLEYF.........ATLLLALVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.36|      37|     651|     424|     462|      11
---------------------------------------------------------------------------
  424-  462 (62.64/45.70)	PPTPGAVFTsdMI.CEAT..IDRIVELLKCLSNYFLLALPFV
 1077- 1116 (56.71/34.99)	PVIPLIVYR..LIeNDATesADRILAMYSLFLAYHPLRFSFV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11587 with Med23 domain of Kingdom Viridiplantae
Unable to open file!