<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11579

Description Uncharacterized protein
SequenceMEKKEIVEAEDELVLPPPPTLNVGIAINGNRKSKYVVSWALDKFIPEENIMFKLLHVRPKITTVPTPMGNSLPISQVRDDVADAYKKEVEWRTNEMLLPYKKMCAQRKVQVDLLVIESDDVANAIAEEVTKGSITKLVIGASSRGIFTRKLKKNSLSSRISVCTPSFCTVYAVSKGKLSSIRPSDLETNGSSKDDCSEASFSSKSSTSYTSSSQTDSGSMASYATFCSPSLPMQRFQALSTVNQTYLHSRTSSLEISQSRSPDIHHSRFQSLDVMGGKDEMSSNPSSSETTRQVLSRNSSGRSFQSDQQSWLSDQISTSDYSSSECQVAFAFYLLKYIYLCMQVNINFELEKLRTELRHLRGMYAIAQSETIDASRKLSTLSKRRLEEAIKLKEISSKEEEAKQLARQEKEKYEAARSEAEHVKECADREASQKREAEMKASHDAKEKEMLENILAGSIEQYQKFAWEEIVLATSSFSEDLRVGMGAYGTVYKCMLHHTAVAVKILHSTENSRTKQFQQELDILSKIRHPHLLLLLGACPDHGCLVYEYMENGSLEDRLLRKNNTQPIPWFDRYRIAWEVASALVFLHNSKPEPIIHRDLKPANILLDQNLVSKIGDVGLSMMLTGDPSSTSTMFKDTGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALTHVVETAIDDNNLAGILDSDAGNWPVEETKELVMLGLSCAELRRRDRPGLKDQVLPILERMKEVANRARISISTVRSAPPNHFICPILKDVMDDPCVAADGYSYDRKAIEKWLANNDNSPMTNLPLSNKILLPNYTLLSAIVEWKSRKQPLIIQYPEDIESQFKEFDEEVKLQCTSWRFSVETNNLSPWKTIPVECGAYVKDYMMGRGYKLDLERVSNEAGVYAKSVELNGDGKDVWVFDIDETLLSNLPYYAEHGYGLEAFDPVQFDKWVSSGIAPAIEPSLKLYEKVLDLGFKVFLLTGRSEEQRSITVENLTRVGFRSWDKLILRDSEDHGKLAKIFKSEKRSKMVEEGYRILGNSGDQWSDLLGSCPAIRSFKLPNPMYYIP
Length1068
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.08
Grand average of hydropathy-0.392
Instability index48.31
Isoelectric point5.95
Molecular weight120356.73
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
acid phosphatase activity	GO:0003993	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11579
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     189.08|      32|      82|     173|     204|       1
---------------------------------------------------------------------------
  129-  170 (33.26/15.21)	VTKGSITklvigassrGIFTR...KLKKNSlSSRISVCTPSFCTV
  173-  204 (49.99/26.36)	VSKGKLS.........SIRPS...DLETNG.SSKDDCSEASFSSK
  206-  226 (21.90/ 7.64)	....................S...TSYTSS.SQTDSGSMASYATF
  256-  289 (39.14/19.13)	ISQSRSP.........DIHHSrfqSLDVMG..GKDEMSSNPSSSE
  295-  325 (44.79/22.89)	LSRNSSG.........RSFQS...DQQSWL.SDQISTSDYS.SSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.11|      38|     122|     770|     807|       3
---------------------------------------------------------------------------
  770-  807 (68.11/42.68)	LKDVMDDPCVAADGYSYDRKAIEKWLANNDNSPMTNLP
  895-  932 (63.00/38.96)	LERVSNEAGVYAKSVELNGDGKDVWVFDIDETLLSNLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.74|      58|      81|     420|     482|       4
---------------------------------------------------------------------------
  420-  482 (81.99/73.34)	AEHVKECADREASQKR..EAEMKASHDAKEKEMLenILAGSIEQYQKFAWEeiVLATSSFsED..LR
  500-  561 (88.75/61.17)	AVAVKILHSTENSRTKqfQQELDILSKIRHPHLL..LLLGACPDHGCLVYE..YMENGSL.EDrlLR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11579 with Med32 domain of Kingdom Viridiplantae
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