<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11577

Description Uncharacterized protein
SequenceMKEHNLPCWVRTKLPLALPNHPSTPISPDVLMPHHPYFDRSQSTVNPISSWQIPSEVAELRKKQDSDASKEHAVPVLNVDVVAEKGSAPVSLSAPAVSTGGRDAIPLRTPVVPGSSSALDLIKKKLQESGVPSSSSPVPVMPVPAAQELNGSRAVDVKGLQSENSKDQLKDANGDGNISDSSSDSEDTDSGPSKEECIKQFKEMLKERGVAPFSKWEKELPKLLFDPRFKAIPTHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDLNTNYQTFKRKWGSDPRFEALDRKDKELLLNERVLPLKKAAEEKAQAERAAAASEFKSMLKEKGDINVNSRWSRVKDNLRDDPRYKAVKHDDREVLFNEYISELRAIEEKAERKEKAKREEEHSIYHFEKKTVARMLKFLKEAIASFQALLVETIKDPQASWTESKHKLEKDPQGRAGNPDLDPSDTEKLFREHIKMLIERCAQDFRALLAEVITPDAAAQETEEGKTVLNSWSTAKRLLKSDPRYNKMPRKEREAVWRRYAEDMLRKQKSASDQGEEKHTDSKGRSSGDLGRYSSGTPCITDCMMAELEKLGQKYRVALKIAKDPRFERLPCVHKGTYSDDCIVERVTHA
Length631
PositionUnknown
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.843
Instability index48.50
Isoelectric point8.37
Molecular weight71312.82
Publications









Function






Annotated function


GO - Cellular Component
nucleolus	GO:0005730	IEA:UniProtKB-SubCell
small-subunit processome	GO:0032040	IEA:InterPro

GO - Biological Function
GO - Biological Process
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11577
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     448.84|      66|      66|     261|     326|       1
---------------------------------------------------------------------------
  198-  255 (78.83/38.98)	.............................I..KQFKE....MLKE..RGVA.PFSKWEKELPKLLFDPRFKA....IPTHSARRSLF...EHYV..KTRAEEERK
  261-  326 (104.63/53.84)	QKA.........................AI..EGFKQ....LLDEASEDID.LNTNYQTFKRKWGSDPRFEA....LDRKDKELLLN...ERVLPLKKAAEEKAQ
  329-  392 (96.43/49.12)	RAA.........................AA..SEFKS....MLKE.KGDIN.VNSRWSRVKDNLRDDPRYKA....VKHDDREVLFN...EYISEL.RAIEEKAE
  395-  484 (70.53/34.20)	EKAkreeehsiyhfekktvarmlkflkeAI..ASFQA....LLVETIKDPQ...ASWTESKHKLEKDPQGRAgnpdLDPSDTEKLFR...EHI...KMLIERCAQ
  490-  557 (73.06/35.66)	LAE.........................VItpDAAAQ.......ETEEGKTvLNS.WSTAKRLLKSDPRYNK....MPRKEREAVWRryaEDMLRKQKSASDQGE
  567-  611 (25.36/ 8.19)	SSG.........................DL..GRYSSgtpcITDCMMAELEkLGQKYRV.ALKIAKDPRFER....L............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.19|      38|      62|      53|      90|       2
---------------------------------------------------------------------------
    2-   26 (19.92/ 7.05)	......................KEHNLPCwvrtkLPL.ALPN.HPSTPI
   53-   90 (63.78/37.53)	IP..SEVAELRKK..QDSDA.SKEHAVPV.....LNVDVVAE.KGSAPV
  112-  155 (45.48/24.82)	VPgsSSALDLIKKklQESGVpSSSSPVPV.....MPVPAAQElNGSRAV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11577 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SSALDLIKKKLQESGVPSSSSPVPVMPVPAAQELNGSRAVDVKGLQSENSKDQLKDANGDGNISDSSSDSEDTDSGPSKEECIKQF
2) SSWQIPSEVAELRKKQDSDASKEHAVPVLNVD
116
49
201
80










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
121
126