<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11572

Description Uncharacterized protein
SequenceMELLNPPHPPHQDPTRDFIPELGFRRQVDIPASTQLPGIAEEAGAVSAGDKEKVFVAVGKSVEKAVSLLQWTLKRFGVGKLPASQANAEVVSAYRREERQHLKKLLESYSSVCGKLKVKTGIISIEADQVHRGIVELVNRHRIRNLVFGAIPENCVRMKKSSSKASYAARNAPYYCEICFVNKGKLVWTREASEEPNSFPPVVQAEASIAHILRSNSLPHSKGDSSVHPESLHSKSSRSIIFSGTTQLTETEPAHMDMSTSPMLPSFTIGNSPHYYQSFSSPSCTNSGSECASSETRLSLDEEENLYSRLREVSMEAEASKNEALAESLKCQKLESQAMEAFSKLKDFESAHIREVKLRKEVDEALRTTMEEQEKLIKEKEEVTRDLQKTMRNVALLNSRAQQANHRHDEATGELKFLRASIATLQQEKQRIRQQKMEAVRWLERWRSRRQAGTAACNGFIGLVEDLPELAEFSLADVQTATCNFSESFKIGKGGHGCVYKGEMLGRTVAIKKLYPHNMQGQSEFQQEAQVLSKLQHPHLVTLLGVCPESWALVYEYLPNGSLQDRLFRKTSVSPLTWKIRARIAAEISSALCFLHSTKPEKIVHGDLKPENILLDSELRCKICDFGISRLVTEDTLYCPSFRRGTEPKGAFPYSDPEFHRVGVLTPKSDIYAFGLIVLQILTGRPPVGLAGEVRKAMSCGKLDSILDTSAGEWPMFVARRLTDLGLQCCELYGRDRPDLKPSVVRELGQLHLSDERTVPSFFLCPILQEIMHDPQVAADGFTYEGEALCGWLENGRETSPMTNLTLSHLHLTPNHALRQAIQDWLCKA
Length829
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-0.399
Instability index48.48
Isoelectric point7.32
Molecular weight92765.81
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11572
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.93|      41|      43|     204|     244|       1
---------------------------------------------------------------------------
  204-  244 (68.21/42.87)	Q.AEASIAHILRSNS..LPHSKGDSSVHPESLHSKSSRSIIFSG
  247-  288 (60.26/37.00)	QlTETEPAHMDMSTSpmLPSFTIGNS..PHYYQSFSSPSCTNSG
  301-  336 (44.46/25.31)	D.EEENLYSRLREVS..MEAEASKNEALAESLKCQKLES.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     327.89|      87|      87|     615|     701|       2
---------------------------------------------------------------------------
  547-  611 (49.35/29.72)	..........................CPeSWALVYEylPNGSL..QDRLFRKTSVspLTWKirARIAAEISS.ALCFLhSTKPEKIVHGDLKPE.....
  615-  701 (151.33/108.61)	LDSELRCKICDFG..ISRLVTEDTLYCP.SFRRGTE..PKGAFPYSDPEFHRVGV..LTPK..SDIYAFGLI.VLQIL.TGRPPVGLAGEVRKAMS.CG
  703-  791 (127.21/89.96)	LDSILDTSAGEWPmfVARRLTDLGLQCC.EL.YGRD..RPDLKPSVVRELGQLH...LSDE..RTVPSFFLCpILQEI.MHDPQVAADGFTYEGEAlCG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.88|      19|      43|      35|      53|       3
---------------------------------------------------------------------------
   35-   53 (31.50/19.83)	QLPGIAEEAGAVSAGDKEK
   80-   98 (31.37/19.72)	KLPASQANAEVVSAYRREE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.62|      40|      47|     363|     402|       4
---------------------------------------------------------------------------
  363-  402 (62.74/57.61)	DEA...LRTTMEEQEKLIKEKEEVTRDLQKTMRNVALLNSRAQ
  409-  451 (61.88/56.70)	DEAtgeLKFLRASIATLQQEKQRIRQQKMEAVRWLERWRSRRQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11572 with Med32 domain of Kingdom Viridiplantae
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