<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11568

Description "Mediator complex, subunit Med25, von Willebrand factor type A"
SequenceMAEKQLIVAVEGTAAMGPYWHTVVSDYLDKIIRCFCSGELNGQKTSTSNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFAGGGFNDAAIAEGLSEALMMFSVASNGNQTQQNVDGQRHCILVSASNPYPLPTPVYRPQIQNLEQTENIEAQTESRLSDAETVAKSFGQCSISLSVICPKQLSKLKAIFSAGKRNPRAPDPPVDNSRNPQFLVLISENFMEGRAAFSRPGVPSLPSNQSPVKMDMASVTSVTVPPPTSVPSANGSMMARQPVSVGSVPTATVKVEPTTITSMGTGPAYPHIPSVPRAPSQAVPTLQTSSPSTTTQEVITSGDNVQEIKPSVSGMTQPLRPVPPAANVNILNNLSQARVMNSAALTGGSSIGLQSMGQTPVAMHMSNMISSGMASSVPPTQTVFSNGQSGMTSLTGSGALTGTAQVPPNSGLSSFASASSNMAGNSNIGISQPMGNVQGGVSMGQSVPGMSQGNVSGAQMVQSGVGMSQNMSGLGPSTVSSGTGTMIPTPGMSQQVQSNMQSLGVSNSSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETFIEPEDFGFCSFRLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQHQQQQQLQQQQHQQMQPQLPQMQQQQPQLPQMQQQQQQLSQMQQQQLPQMQQQQQPQLPQMQQQQSQLPQMQQQHQLQQLQPQQQQQLQQQQLPHLQQQQQLSQLQQQQQLSQLQQQQQQLQQHPQLPQQAQLPQMQPQQLPQQQPMVGSGMGATYVQGPGRSQLVSQGQVSSQAPPNMPGGGFMG
Length892
PositionUnknown
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.04
Grand average of hydropathy-0.414
Instability index66.98
Isoelectric point8.46
Molecular weight95978.44
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11568
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     226.18|      32|      32|     729|     760|       1
---------------------------------------------------------------------------
  731-  760 (65.88/16.64)	QQPQLPQMQQQQQQLSQM.QQQ.QLPQMQQQQ....
  764-  792 (51.98/11.64)	....LPQMQQQQSQLPQM.QQQhQLQQLQPQQ..QQ
  795-  828 (54.01/12.37)	QQQQLPHL.QQQQQLSQLqQQQ.QLSQLQQQQqqLQ
  829-  852 (54.30/12.48)	QHPQLP....QQAQLPQM.QPQ.QLP....QQ..QP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     244.21|      27|      27|     393|     419|       2
---------------------------------------------------------------------------
  245-  266 (30.73/ 9.20)	S..NQSPVKMDMAS.....V....TS.......VTVP..PPT
  300-  319 (25.83/ 6.55)	SM.GTGPAYPHI.....................PSVPraPSQ
  393-  419 (51.56/20.47)	SM.GQTPVAMHMSN.....M....ISSGM...ASSVP..PTQ
  423-  447 (27.42/ 7.41)	SN.GQS..GM..TS.....L....TGSGAltgTAQVP..P.N
  448-  470 (26.52/ 6.93)	S..GLSSFASASSN.....M......AG....NSNIG..ISQ
  480-  507 (31.14/ 9.43)	SM.GQSVPGMSQGNvsgaqM....VQSGV...GMS......Q
  508-  528 (26.00/ 6.65)	NMsGLGP......S.....T....VSSGT...GTMIP...TP
  529-  555 (25.02/ 6.12)	GM.SQ.QVQ...SN.....MqslgVSNSS...AASMP..LSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.65|      29|      52|     644|     672|       3
---------------------------------------------------------------------------
  644-  672 (52.45/22.87)	DFLVFRAM..NQHGFLGQLQEKKLCAV.IQLP
  695-  726 (45.20/18.68)	DMVVFKPQisSQHQQQQQLQQQQHQQMqPQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.67|      13|      33|     286|     299|       6
---------------------------------------------------------------------------
  286-  299 (18.47/14.53)	VPTATVKvEPTTIT
  321-  333 (23.21/13.45)	VPTLQTS.SPSTTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.92|      10|      15|     586|     595|       8
---------------------------------------------------------------------------
  586-  595 (18.38/10.80)	FITRLE.GYRS
  602-  612 (15.55/ 8.16)	FIEPEDfGFCS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11568 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AFSRPGVPSLPSNQSPVKMDMASVTSVTVPPPTSVPSANGSMMARQPVSVGSVPTATVKVEPTTITSMGTGPAYPHIPSVPRAPSQAVPTLQTSSPSTTTQEVITSGDNVQEIKPSVSGMTQPLRPVPPAANVNILNN
2) MAGNSNIGISQPMGNVQGGVSMGQSVPGMSQGNVSGAQMVQSGVGMSQNMSGLGPSTVSSGTGTMIPTPGMSQQVQSNMQSLGVSNSSAA
3) NSAALTGGSSIGLQSMGQTPVAMHMSNMISSGMASSVPPTQTVFSNGQSGMTSLTGSGALTGTAQVPPNSGLSSFASA
4) PQMQQQQQPQLPQMQQQQSQLPQMQQQHQLQQ
5) QQQQLQQHPQLPQQAQLPQMQPQQLPQQQPMVGSGMGATYVQGPGRSQLVSQGQVSSQAPPNMPGGGFMG
6) QQQQLQQQQHQQMQPQLPQMQQQQPQLPQMQQQ
234
460
379
754
823
709
371
549
456
785
892
741










Molecular Recognition Features






MoRF SequenceStartStop




NANANA