<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11566

Description Uncharacterized protein
SequenceMAMKGLPIEQWRDYFRTANSDIFDIIDHAITVAALDCPKEFRLRRDQIAEKLFTCKFTRCSGCDRVELAVPEYGDDSDGGSGGGGCQGTTRFKREADEEEDGCEFFEAGGSKESKANSSRDDPLMNQIASNYSYGEAEALTDEIEEESMIIGEVYRIKELLLNSQDEPDSVLLDSLRRLELMALTVDILKATGIGKAVNRVRKHSSKQIRHLAQTLIDGWKELVDEWVNATKAITEGTPESANPSVVDEEEEEEGLPSPPLDIGAFFATQPTSMELSQFFDGMDDDENPRNSGEFIKNRDNRRKPSQENQNVSRRKQQTSSEANLRAKDERSQQMKRQEHVAKPNKPPSTNIGSGRPPKHDMEQKANIEPKLLNKSDKMTIPKKPLSSQQDKFKASDEERKLEATKRKLQERYQQAEIAKRKRTIQVMELHDLPKQGSGHKNPFVKPGNHNWHWANGRR
Length459
PositionUnknown
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.991
Instability index55.60
Isoelectric point5.63
Molecular weight52005.42
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11566
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.41|      12|      15|     278|     291|       1
---------------------------------------------------------------------------
  278-  289 (23.07/15.50)	QFFDGMDDDENP
  294-  305 (21.33/ 6.94)	EFIKNRDNRRKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.59|      19|      20|      72|      91|       2
---------------------------------------------------------------------------
   60-   84 (32.87/22.04)	CSGCDRvelavpEYGDDSDGG...SGGG
   86-  110 (26.72/11.28)	CQGTTR...fkrEADEEEDGCeffEAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.14|      16|      20|     145|     161|       3
---------------------------------------------------------------------------
  145-  161 (21.95/19.76)	EEESMIIGEVYRIkELL
  167-  182 (25.20/17.39)	EPDSVLLDSLRRL.ELM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.66|      20|      26|     334|     359|       4
---------------------------------------------------------------------------
  334-  359 (27.20/29.46)	QMKRQEHVaKP...NKPPSTNIgsgrpPK
  361-  383 (30.46/15.53)	DMEQKANI.EPkllNKSDKMTI.....PK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11566 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MELSQFFDGMDDDENPRNSGEFIKNRDNRRKPSQENQNVSRRKQQTSSEANLRAKDERSQQMKRQEHVAKPNKPPSTNIGSGRPPKHDMEQKANIEPKLLNKSDKMTIPKKPLSSQQDKFKASDEERKLEATKRKLQERYQQAEIAKRKRTIQVMELHDLPKQGSGHKNPFVKPGNHNWHWANGRR
2) TKAITEGTPESANPSVVDEEEEEEGLPSPPLDIGAFFAT
274
231
459
269










Molecular Recognition Features






MoRF SequenceStartStop




1) NHNWHWANGRR
449
459