<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11565

Description Heat shock protein 70 family
SequenceMLTRTMLTRNKSLWLLLLFLSEFLLGIAVAADEPKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTQRLIGEAAKNQAALNAERTIFDVKRLIGRNFNDPEVQRDMKFLPYKIVNKDGKPYIQVKVKDEIKVFSPEEISAMILTKMKETAEDYLGKKIKDAVITVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDKKGEEKNILVYDLGGGTFDVSLLTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKALGKLRRKCERAKRALSSQHQVRIEIESLFDGVDFSESLTRARFEELNMDLFKKTLGPVKRALEDANLKKSDIHEIVLVGGSTSIPKVQQMLKDLFDSKEPSKGINPDEAVAYGAAVQGGILSGEGGEGTGDILLLDVAPLSLGIETAGGVMTKLIPRNTVIPTKKSQVFTTYQDKQTTVSIRVFEGERSLTKDCRELGKFDLTGIPPAPRGVPQIEVTFEVDANGILHVTAQDKAAKKAKSITITNDKGRLSQEEIDRMVQEAEEFAEEDRKVREKIDSRNKLESYIYNMRSTIDDKDKLADKIDSDDKEKIETTLKEALDWLDDNQNGEKEDFDEKLKEVEAVCNPVIKQVYEKHGGSSSGSQEEDEPTDDEL
Length665
PositionUnknown
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.452
Instability index32.44
Isoelectric point5.21
Molecular weight73897.06
Publications









Function






Annotated function


GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11565
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.62|      25|      26|     563|     587|       1
---------------------------------------------------------------------------
  563-  587 (42.87/26.62)	KVREKIDS..RNKLESYIYNMRSTIDD
  590-  616 (36.75/21.85)	KLADKIDSddKEKIETTLKEALDWLDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.61|      16|      16|     186|     201|       2
---------------------------------------------------------------------------
  186-  201 (26.70/16.63)	AQRQATKDAGTIA.GLN
  203-  219 (21.91/12.43)	ARIINEPTAAAIAyGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.68|      16|      16|     435|     450|       3
---------------------------------------------------------------------------
  435-  450 (27.13/17.42)	IET.AGGVMTKLIPRNT
  452-  468 (23.55/14.25)	IPTkKSQVFTTYQDKQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.22|      22|      22|     106|     127|       4
---------------------------------------------------------------------------
   83-  103 (21.18/11.54)	LIGeaaKNQAALNAERTI.....FDV
  106-  127 (38.49/27.22)	LIG...RNFNDPEVQRDMK.FLPYKI
  130-  152 (30.55/20.02)	KDG...KPYIQVKVKDEIKvFSPEEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.91|      18|     357|     163|     185|       5
---------------------------------------------------------------------------
  163-  185 (25.50/32.02)	TAEDYLGKKIKDAVITvpayfND
  521-  538 (30.41/20.95)	TAQDKAAKKAKSITIT.....ND
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11565 with Med37 domain of Kingdom Viridiplantae
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