<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11564

Description Formin-like protein
SequenceMVPTKEEEDKLFSYKGDINELGAAEKFVKLLLTIPFAFFRAEAMLYRETFEDEVIHLKNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVSDSIMGKINQGNKIRSNEEKEEDYRRMGLDLVSGLGTELYHVKKTATIDLDVLASSVSNLSDGKAKLQHLVQVELSNDEKSGNFIHSMNSFLIYADKNLKELQEDEHRVLLHVKEITEYFHGDVTKLDEANPLRIFVIVRDFLGMLDHVCKELRNLKVPTSKQSKPSGSISVDFRIFLVCIAVAAEEPKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTIFDVKRLIGRKFNDPEVQRDMKFLPYKIVNKDGKPYIQVKVKDEVKVFSPEEISAMILTKMKETAEAYLGKKIKDAVITVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSESLTRARFEELNMDLFKKTLGPVKRALEDANLKKSDIHEIVLVGGSTRIPKVQQMLKDLFDGKEPSKGINPDEAVAFGAAVQGGILSGEGGEGTGDILLLDVAPLSLGIETAGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVTIRVFEGERSLTKDCRELGKFDLTGIPPAPRGVPQIEVTFEVDANGILHVTAEDKAAKKAKSITITNDKGRLSQEEIDRMVKEAEEFAEEDRKVREKIDSRNKLETYIYNMRSTIDDKDKLADKIDSDDKEKIETTLKEALEWLDDNQNGEKEDFDEKLKEVEAVCNPVIKQVYEKSGGSSAGSQEEDEPTDEL
Length957
PositionUnknown
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.396
Instability index30.09
Isoelectric point5.46
Molecular weight106757.47
Publications









Function






Annotated function


GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11564
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.93|      44|      53|     558|     605|       1
---------------------------------------------------------------------------
  558-  605 (66.98/60.58)	FDHrvMDYFIKLIKKKY...NKDISKdnKALGKLRRECERAKRALSSQHQV
  613-  659 (69.95/49.14)	FDG..VDFSESLTRARFeelNMDLFK..KTLGPVKRALEDANLKKSDIHEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.55|      31|      53|     837|     868|       2
---------------------------------------------------------------------------
  837-  868 (46.84/34.86)	QEEIDRMVKEAEEFAeEDRKVREKIDSRNKLE
  893-  923 (52.70/34.73)	KEKIETTLKEALEWL.DDNQNGEKEDFDEKLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.63|      27|      47|     447|     475|       4
---------------------------------------------------------------------------
  447-  475 (39.68/31.09)	AMILTKMKETAEAY.LGKKIKDAVITVpaY
  496-  523 (38.95/23.52)	ARIINEPTAAAIAYgLDKKGGEKNILV..Y
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.08|      18|      19|     728|     745|       5
---------------------------------------------------------------------------
  728-  745 (28.40/21.44)	IETAGGVMTKLIPRNTVI
  746-  763 (29.67/22.76)	PTKKSQVFTTYQDQQTTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.04|      19|      21|     304|     322|       7
---------------------------------------------------------------------------
  304-  322 (33.26/17.65)	KPS.GS.ISVDFRIFLVCIAV
  326-  346 (25.79/12.30)	EPKlGTvIGIDLGTTYSCVGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.31|      28|     168|      55|      82|       9
---------------------------------------------------------------------------
   55-   82 (47.59/38.65)	IHLKNSFSML.EEACKELRSS..RLFLKLLE
  224-  254 (36.67/27.81)	IHSMNSFLIYaDKNLKELQEDehRVLLHVKE
  276-  296 (30.04/21.22)	VIVRDFLGML.DHVCKELRN......LK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.07|      21|     350|     174|     195|      10
---------------------------------------------------------------------------
  174-  195 (31.64/25.96)	LGTELYHVKkTATID...LDVLASS
  525-  548 (31.43/20.42)	LGGGTFDVS.ILTIDngvFEVLATS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11564 with Med37 domain of Kingdom Viridiplantae
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