<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11561

Description Uncharacterized protein
SequenceMEESPIVNATTPTNSSNKTTQELAAEGLKHLEETIEAAFQILSSMNDELCNPALWSTTPSSTNPSTASTPNAAASNGPSPLSNGAVLQNGDSASDCGHHLEMGGIGGSGNGALDEARLRYKNSVASLRAVLAAIPNSQKAKAFETGSAASSPMEEADIDKLEDQASDLRKEVADKNEHLKLLIDQLRELITDISTWQSPCSI
Length202
PositionHead
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.02
Grand average of hydropathy-0.447
Instability index36.80
Isoelectric point4.56
Molecular weight21220.12
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11561
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.20|      21|      46|       5|      25|       1
---------------------------------------------------------------------------
    5-   25 (37.04/21.51)	PIVNATTP..TNSSNKTTQELAA
   52-   74 (35.16/20.09)	PALWSTTPssTNPSTASTPNAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.92|      21|      70|      75|      95|       2
---------------------------------------------------------------------------
   75-   95 (36.82/20.97)	SNGPSPLSNGAVLQNGDSASD
  147-  167 (35.10/19.68)	SAASSPMEEADIDKLEDQASD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11561 with Med30 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CNPALWSTTPSSTNPSTASTPNAAASNGPSPLSNGAVLQNGDSASDCGHHLEMGGIGGS
2) KAFETGSAASSPMEEADIDKLEDQASDLRK
3) MEESPIVNATTPTNSSNKTTQELAAEGLKH
50
141
1
108
170
30










Molecular Recognition Features






MoRF SequenceStartStop




1) EARLRYKN
115
122