<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11560

Description "Mediator complex, subunit Med27"
SequenceMLQQQLQQHQHQLQSAATAATPPLPAATSTPPPSTTGEAPPKQVALAMDRLGQAARLIADIRLGADRLLEALFVSSQPHQSSKPLHFFRQEDESMRQHLQDLRSVGRQLEESGVLNESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEQDGQGTDSASKKRRSLQTLPEDNQDILSDCKTLSDILTSLEKDTSNLKVSTYERLDWLKRASSLPASANDNTVEVPKHNFHSSSILRPEPENFVSMDKVAVIELFFPSIFRAVVSLHPAGSTDPDSVAFFSPDEGGSYIHARGSSVYHIFRHITEHAIVALQYFLGIRSETALHSLLHWICSYQTLFTKVCSKCGRLLAMDKQSALLLPPVYRPYRNFSPSKVTSTQPVSPTGDQNSYVPGAYHIGCFSDEV
Length433
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-0.386
Instability index60.36
Isoelectric point7.00
Molecular weight47996.56
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11560
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.47|      49|     101|     274|     330|       2
---------------------------------------------------------------------------
  274-  330 (70.85/57.36)	FVSMDKVAviELFFPSIFRAVVSLHPAGSTDPDSVAffSPDEGGSYIhargSSVYHI
  378-  426 (88.62/48.98)	LLAMDKQS..ALLLPPVYRPYRNFSPSKVTSTQPVS..PTGDQNSYV....PGAYHI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.58|      18|      19|     200|     218|       5
---------------------------------------------------------------------------
  200-  218 (26.90/21.55)	LPEDNQDI.LSDCKTLsDIL
  221-  239 (26.68/16.23)	LEKDTSNLkVSTYERL.DWL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11560 with Med27 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLQQQLQQHQHQLQSAATAATPPLPAATSTPPPSTTGEAPPKQVAL
1
46










Molecular Recognition Features






MoRF SequenceStartStop




NANANA