<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11558

Description Uncharacterized protein
SequenceMDSPNPSPTQPTMDTVDWRSQLPFDLRNKIITHFLIIERKYARTEKMLMIEKKFKKTAQDTGNNSEHPGAGCQSMQQQNQIHSQGQTIRIPRPQGSNQRQQLLAQNVKNNMASSGFQSGMPPVPNVGGQNMSGISQNSMGQGIVPSHIYSIQQRQIQMQQGVQQQQQQQLIYCNNMNRPMKVQQGQVPRPDMQQPQQYQLHLQGCVPKMQSINAGQYCSMQHVAPTPLHQQANISSLPSHSQSHSHSHNGVNYVGKQNMNPLQSIENTSSLSSQSGLSVGQQNMNLLHSNPNMLQQQHLKQQQMLQSQQPGMGVKPHQQFRPGSQFPISSPQVASPKHSSPKVDQQSLLTSNIIEQPPLERLIKAVQSMPPVAIALGAAVSDIASVVIMSDTIADSAPGKTSEAAIGADLVSMTKCHLRARKFITKHANRMTRYINAMPLE
Length441
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.03
Grand average of hydropathy-0.683
Instability index68.14
Isoelectric point9.81
Molecular weight48863.01
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11558
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     341.36|      62|      63|      97|     159|       1
---------------------------------------------------------------------------
   58-   96 (40.66/10.66)	.......AQDTG.NN........SEH...PGAGCQSM.........QQQNQ.iHSQG.QTIrIPRPQGS..........
   97-  159 (108.41/43.68)	NQRQQlLAQNVK.NNMASS.GFQSGMPPVPNVGGQNM.........SGISQ..NSMG.QGI.VPSHIYSIQQRQI.QMQ
  163-  221 (75.57/26.35)	QQQQQ..QQLIYcNNMNRPmKVQQGQVPRP.....DM.........QQPQQ..YQLHlQGC.VP.KMQSINAGQYcSMQ
  233-  287 (59.08/19.02)	N.....ISSLPS.HSQSHS.HSHNG...VNYVGKQNMnplqsientSSLSS..QS.G..........LSVGQQNM.NLL
  292-  338 (57.64/18.38)	NMLQQ...QHLK.QQQMLQ.SQQPGMGVKPH...QQF.........RPGSQfpISSP.QVA.SPKH.............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11558 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLMIEKKFKKTAQDTGNNSEHPGAGCQSMQQQNQIHSQGQTIRIPRPQGSNQRQQLLAQNVKNNMASSGFQSGMPPVPNVGGQNMSGISQNSMGQGIVPSHIYS
2) PLHQQANISSLPSHSQSHSHSHNGVNYVGKQNMNPLQSIENTSSLSSQSGLSVGQQNMNLLHSNPNMLQQQHLKQQQMLQSQQPGMGVKPHQQFRPGSQFPISSPQVASPKHSSPKVDQQSLLTS
47
227
150
351










Molecular Recognition Features






MoRF SequenceStartStop




NANANA