<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11554

Description Uncharacterized protein
SequenceMAVVSPVPAATAITPVVNSVRFHDLRAPGIMSGRREIVEEPVARIIEEKIYVAVGKEVEKYKSVLFWALQNSGGKGICIIHVHQPAKMIPVSEMGTKFPANKLKEKEVKAYWEFERQEMRKTLNKYLMLCFQRGVQAEKLYIEMDSIEKGILEMISENGIRILVMGGAADKHSSKKLVDLKSKKAIFVRDHAPSSCHTIQFLCKGLLIFTRKLSLDATDGEVASSSLPATSNLESRENHLKSQSVILRQTSQAKPSTSTPELRRAISENVYGRVGSVMGFTSADGNGGLSTPQSRSDAEGSSDEWDGLSRRSPHSSALSSCSSSGMADAALVPYTGTEVNENGIDSSAVIQAKENFHPSSPPSVLDGTMDDTLYDQLHQVMAEAANSRREAFEEAVRRTKAEKDALEAIRRVKASEILYKQELKQREEIEEALAREKEELDKMKNLRDEVMLELQNALEQKSSLEKEIVESEKVVKELEEKIISAVELLQNYKQERDELQMERDNALREAEELRKSRAETSGSHIPQFFTEFSFSEIEEATHNFDPSLKIGEGGYGSIYKGLLRHITVAIKMLHSNSLQGPSEFQQEVDVLSKMRHPNLVTLIGACPEAWTLIYEYLPNGSLEDRLSCRDNSPPLSWQTRIRIATELCSVLIFLHSSKPHGIVHGDLKPANILLDANFVTKLSDFGICRLLSNNTTVCCRTDPKGTFAYMDPDFLSTGEITPKADVYSFGIILLRLLTGKQALGITKEVQYALDNGNLKNILDPLAGDWPFVQAEQLANLALRCCEMNRKSRPDLSTDVWRVLEPMRASCGGSSSFHLGSEERCQAPHYFICPIFQEVMQDPHVAADGFTYEAEALRVGIAVEESKHTLLWALQTLIHTKICILHIHQPTNGGSYATSRLQRVMNDYLLICAQKGTQAEKLLIEMDDVAKGIVQLIHEHNIKKLVMGAAADKHFSEGMTDLKSEKALYVNQHAPSSCEIWFVCGGREVHERLIVEPGPSNLRNASSSSYSTCSSILGFNSDLIVSETSDESPDWLESNEVNSSDGHQLCDKLEQALLDAEKSNNDAFEELDRRVKAQKNALKAVMLQARELKISYTGELSRWKETEATLLQQKEELERIKQQRDQARKIAKAQKLILESQGPNSDHIKVLEAKVTSAMEQLQICQRERDELQRKLENTSKQIDETSKKQEEETSGVNIPQFFSEYSVAEIHDATEDFDPSYKIAYGRIYKCTLRHTEVAIKVLNQSRLQGPSQFQQEVDIMSKLRHPNLVTLIGVCPEIWALIYEYLPNGSLEDRLNRRDDTPPLSWQTRIHIATEICSALIFLHSSKPQKLVHGNLKPGNILLDTNFGCKLSDFGVSHDVSSLEHSINMNNIRSRFPYLDPQCLTTRTLTHSSDIYSFGIILLQLLTRKSPLHIAEKVQNALNEGYLNDILDPSAGGWSYSQAAQLTHLALRCCDTNRSRRPDLASEVFSLLEQMRADIGPLTTFHAGCGDQRQTPSYFICPILLEIMRNPYVAADGHTYELRAIQEWLDRGKDTSPKTNNRLAHRNLVPNYTLRSAILEYLQQQEQR
Length1569
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.414
Instability index49.36
Isoelectric point5.87
Molecular weight176213.11
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11554
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     310.77|      70|      71|     373|     442|       1
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  371-  433 (90.57/65.43)	.......DTLYDQLHQVMAEAANS..RREAFE.EAVRRTKA...........EKDALEAIR.RVKASEIL..YKQELKQ.REEIEEAL
  434-  507 (85.79/61.52)	AREKEELDKMKNLRDEVMLELQNAleQKSSLEkEIVESEKV...........VKELEEKI...ISAVELLqnYKQERDElQMERDNAL
 1048- 1109 (76.70/54.07)	.........LCDKLEQALLDAEKS..NNDAFE.ELDRRVKA...........QKNALKAVMlQARELKIS..YTGELSR.WKETEATL
 1110- 1177 (57.71/38.52)	LQQKEELERIKQQRDQA.........RK......IAKAQKLilesqgpnsdhIKVLEAKV...TSAMEQLqiCQRERDElQRKLEN..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.22|      16|     299|     526|     542|       2
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  526-  541 (31.45/22.46)	PQFFTEFSFSEIEEAT
 1199- 1214 (31.77/16.69)	PQFFSEYSVAEIHDAT
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|    1231.29|     312|     667|     543|     857|       3
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  543-  857 (613.90/448.29)	NFDPSLKIgegGYGSIYKGLLRHITVAIKMLHSNSLQGPSEFQQEVDVLSKMRHPNLVTLIGACPEAWTLIYEYLPNGSLEDRLSCRDNSPPLSWQTRIRIATELCSVLIFLHSSKPHGIVHGDLKPANILLDANFVTKLSDFGICRLLSNNTTVCCRTDPKGTFAYMDPDFLSTGEITPKADVYSFGIILLRLLTGKQALGITKEVQYALDNGNLKNILDPLAGDWPFVQAEQLANLALRCCEMNRKSRPDLSTDVWRVLEPMRASCGGSSSFHLGSEERCQAPHYFICPIFQEVMQDPHVAADGFTYEAEALR
 1216- 1527 (617.38/442.59)	DFDPSYKI...AYGRIYKCTLRHTEVAIKVLNQSRLQGPSQFQQEVDIMSKLRHPNLVTLIGVCPEIWALIYEYLPNGSLEDRLNRRDDTPPLSWQTRIHIATEICSALIFLHSSKPQKLVHGNLKPGNILLDTNFGCKLSDFGVSHDVSSLEHSINMNNIRSRFPYLDPQCLTTRTLTHSSDIYSFGIILLQLLTRKSPLHIAEKVQNALNEGYLNDILDPSAGGWSYSQAAQLTHLALRCCDTNRSRRPDLASEVFSLLEQMRADIGPLTTFHAGCGDQRQTPSYFICPILLEIMRNPYVAADGHTYELRAIQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     591.00|     172|     779|      54|     255|       4
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   54-  255 (279.07/279.97)	VGKEVEKYKSVLFWALQNSGGKGICIIHVHQPAKmipvsemGTKFPANKLkekevkayweferqemRKTLNKYLMLCFQRGVQAEKLYIEMDSIEKGILEMISENGIRILVMGGAADKHSSKKLVDLKSKKAIFVRDHAPSSCHtIQFLCKGLLIFTRkLSLDATDGEV...ASSSLPATSNLESRENHLksqsvILRQTSQAKP
  858- 1032 (311.93/236.79)	VGIAVEESKHTLLWALQTLIHTKICILHIHQPTN.......GGSYATSRL................QRVMNDYLLICAQKGTQAEKLLIEMDDVAKGIVQLIHEHNIKKLVMGAAADKHFSEGMTDLKSEKALYVNQHAPSSCE.IWFVCGGREVHER.LIVEPGPSNLrnaSSSSYSTCSSILGFNSDL.....IVSETSDESP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.64|      13|      18|     282|     294|       5
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  282-  294 (24.82/14.53)	SADGNGGLS..TPQS
  301-  315 (21.82/11.81)	SSDEWDGLSrrSPHS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11554 with Med32 domain of Kingdom Viridiplantae
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