<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11551

Description Uncharacterized protein
SequenceMAVSIQAASPVWDSVMEQIKFAQDRNTDPLLWAVQLSSSLHSAGVSLPSIDLAHLLVSHICWDNHVPIAWKFLEKALIAKLVPPVLVLALLSTRVIPNRKLHPAAYRLYMELLRRHAFSLKSEINGPNYPKIMKSVDDVLHLSEIFGLQVSEAGLLLVEFVFSVIWQLLDASLDDEGLLELSPEKRSIWPTLTQDMEIDNPENFNEKRNEQHDVLCKGNTTMAIEIVGEFLQNKVTSRILFLARRNMPTHWGAFIQQLRILAAQSMALRNSKYVTPDALLQLTSDTRKVLSRESKIISQEFHAVIGSGSLTSSSGQYHGTSSSGHWLPIDLFLEDAMDGSEVAATGAVESLIGLVKALQAVNGTTWHDTFLGLWIAALRLVQRERDISEGPVPRLDTCLCMLLSITPLAVANIVEEEESELIDENDCSTTNQTKEKQPQGRRRKDLISSLQMLSDYEALLIPPQSVRTVANQAAAKAIMFVSGLTVGNGYYESMSINDMPMNCSGNMRHLIVEACIARNLLDTTAYAWPGYVNARANIPRSVPNQVPGWSSLMKGSPLTPTLINALIATPASCLAEIEKIYEIATKGSDDEKISAASILCGASLVRGWNVQEHTILFISFLLSPPVPADYSGSDSHLISYAPFLNVLLVGISSVDCVQIFSLHGLVPLLAGTLLPLCEVFGSIAPNVTWTLPTGEELTSHAVFSNAFTLLLRLWRFDHPPLEHVMGDAKPVVSQQSPEYLLLVRNSRLSDFGKSPQDRLRSKRLSKSLNVSLDCIFMDSFPKLKRWYQQHQECIASTLSGLVQGTTVHQIVDALLHMMFRKISRGGQSSATSGSSTSSASGTEDVSVRLKVPAWDILEATPYVLDAALTACAHGRLSPRELATGLKDLADFLPATLGTIVSYFSAEVTRGIWKPAFMNGTDWPSPAANLSVVEQQIKKILAATGVDVPSLAIGGNSPAMLPLPLAALVSLTITYKLDKATERFLILVGPALNSLAEGCPWPCMPIIASLWAQKVKRWSDFLVFSASRTVFHHSSDAVVQLLRSCFTSTLGLSPSTIYSNGGVGALLGHGFGSHFSGGMSPVAPGILYLRVHRSIRDILFMTEEIVSLLMSSVRDIASSGLSREKLDKLKKAKFGLRYGQVSLGAAMTRVKLAASLGASLVWLSNGLSLVQSLIKETLPSWFIATHTQEQDDEVGGAVAMLGGYALAYFTLLCGAFAWGVDSTSPASKRRPNVLGAHLEFLASALDGKISLGCNYATWRAYVTGFLSLMVGCAQKWILDVDVDVLRRLSHGLRQWKEEELAMALLGLGGVGAMSAAAELIIEIGD
Length1324
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy0.160
Instability index45.99
Isoelectric point6.22
Molecular weight144206.83
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11551
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.88|      21|      76|     918|     938|       2
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  918-  938 (37.24/20.58)	NGTDWPSPAANLSVVEQQIKK
  996- 1016 (42.64/24.63)	EGCPWPCMPIIASLWAQKVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.97|      22|     782|      66|      94|       5
---------------------------------------------------------------------------
   66-   94 (31.02/33.42)	VPiAWKFLEKaliaklVPPVLVLAL.......LSTR
  851-  879 (35.95/20.38)	VP.AWDILEA......TPYVLDAALtacahgrLSPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.42|      46|     520|     548|     593|       6
---------------------------------------------------------------------------
  548-  593 (78.56/52.40)	GWSSLMKG..SPLTPTLI.........NALIATPASCLAEIEKIYEIATKGSDDEKI
 1069- 1125 (64.86/41.85)	GFGSHFSGgmSPVAPGILylrvhrsirDILFMTEEIVSLLMSSVRDIASSGLSREKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.28|      43|     244|     952|     995|       8
---------------------------------------------------------------------------
  952-  995 (67.49/50.18)	IGGnSPAML...PLPLAALVSLTITYKLDK...ATERFLILVGPALNSLA
 1193- 1241 (64.79/43.02)	VGG.AVAMLggyALAYFTLLCGAFAWGVDStspASKRRPNVLGAHLEFLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.02|      32|     296|     724|     755|      12
---------------------------------------------------------------------------
  724-  755 (54.63/31.08)	VMGDAKPVVSQQSPEYLLLVRNSRLSDFGKSP
 1022- 1053 (54.39/30.92)	VFSASRTVFHHSSDAVVQLLRSCFTSTLGLSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11551 with Med33 domain of Kingdom Viridiplantae
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