<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11550

Description Uncharacterized protein
SequenceMEMDMDIENELDRRLLELEEERSPSPVVWAAEMAKCIASHGLGLPSTELGQLFFFIRVIPYRQSHPEAFRLYVELLRRFALSFDPSIPDDCKHKIVESVNVNLQLSQNYSVQVVELGHAFVLFFFTIISALVDCASDDWGLQMASIDVRNGAVATGSMDYQHMDIDPGGACHIERKQCQEHMRSKNSFLAIEIVGQLTESIRAMVLLRLVYLNMPEKFNGLLHKLHFVEANNLVSSSLKSANQNLARLFANVKQIPSFEYQLKKHWFIGMLMDVGSCKPVSCCNFGPIQSACWVPFDIYMENAMDGKQLSVKSAIVLLTETIYTLQVFNRASWKETFLSLWLSALRLVQRERDPLEGPIPHLEARLCILLSIVPLAIANVFEDEAKLHSFQESRYEEGIDGKGCDETKKGLISALQMLGSFSGLLCPPASILAAANTAAAKAASCVSKNRMDGVDSSSAIETCLIAGGNMRHLIVEACIARNLIDSSAYYWHGYVFSSTVSSEPLPIKKSPWSIFMEGAPLSGHLVNSLLTTPASSLAEIEKLYHIALSGPAEEKPVAAKILCGASLSNGWNVQEHVVHFVVKLLSPPVPPGYSEPMNHLIDHMPMLSAVLFGASSIDTVHILSLHGVIPEVAAALMPLCETFGSLVPTLCSKSSTSDEPSSYLIFSAAFLFLLRLWKFYKPPLELGLTGGAMGGELTLEYLLLLRNSHIASQNPAAEAETDSNMDQFQFASDKPVYIDYFPKLRAWYCQNRSCIASTLSGLCSGNPVHEVANKIVSMIYWKMTKSGASQGNSSTPSTSSNCGSPISNAEDVYQIPILPAWEVLEAIPFVLEAILTACAYGRLSSRDLTTGLRDLVDFLPASLAVIISYFSAEVTRGIWKPVPMNGTDWPSPSAILPLIESEMKQILAGAGVNVPSCSFGTSLMLPLPIAALVSLTITFKLNKSLEYIHAVVGPALENCASSCPWPSIPIIGSLWAQKIHRWHNFIVVSCSRSVFRQNKEAIAQLLRSCFASFVGSLHNSTLSTNQSSVNGLLGSIIATAGDCPSIAPGFLYLRSCRTIQDIQYVNDVIIELVAEYARESASRWTSKDTRSLKSGNSSLFFSASIAREVAMLGASLLCVSGGFQLVQELYRETIPTWLLSSKGEKLGKVSSVACIMEGYAMAYLLVMSGSFAWGVGAKTPSSATSKRACMVGVHMDFLARVLEGQISLGCNPATWRAYVSCLVGLTVSCAPAWIQQVKLETLRKLASGLRGWDEYELALSLLERGGVPAFGSVAELVNVIN
Length1281
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.08
Grand average of hydropathy0.203
Instability index47.02
Isoelectric point5.94
Molecular weight139909.22
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11550
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     193.90|      62|      74|     845|     918|       1
---------------------------------------------------------------------------
  845-  918 (94.90/83.46)	SRDLTTGLRDLVdflpaSLAVIisyF....SAEVTRGIWKPVPMN...GTDWPSpsaiLPLIESEMKQ.ILAGAGVNVPSCS
  922-  991 (99.00/58.82)	SLMLPLPIAALV.....SLTIT...FklnkSLEYIHAVVGPALENcasSCPWPS....IPIIGSLWAQkIHRWHNFIVVSCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.09|      37|      74|     711|     747|       2
---------------------------------------------------------------------------
  711-  747 (63.20/36.65)	ASQNPAAEAETD.SNMDQFQFASDKPVYIDYFPKLRAW
  750-  787 (48.67/26.51)	QNRSCIASTLSGlCSGNPVHEVANKIVSMIYWKMTKSG
  788-  821 (55.21/31.07)	ASQGNSSTPSTS.SNCGS.PISNAEDVY..QIPILPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.19|      41|      74|     520|     563|       3
---------------------------------------------------------------------------
  520-  563 (64.60/47.17)	PLSG.........HLVNSLLTTP.........................ASSlaeIEKL..YHIALSGPAEEKPVAAKIL..C
  566-  640 (48.64/27.85)	SLSNgwnvqehvvHFVVKLLSPPvppgysepmnhlidhmpmlsavlfgASS...IDTV..HILSLHGVIPEVAAALMPL..C
 1012- 1056 (58.94/35.49)	SFVG.........SLHNSTLSTN.........................QSS...VNGLlgSIIATAGDCPSIAPGFLYLrsC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.86|      20|      68|     335|     364|       5
---------------------------------------------------------------------------
  337-  356 (35.29/31.95)	FLSLWLSALRLVQRERDPLE
  666-  685 (37.57/11.06)	FSAAFLFLLRLWKFYKPPLE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11550 with Med33 domain of Kingdom Viridiplantae
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