<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11547

Description Histone H1/H5
SequenceMIVEAIGALKDSNGSSKRAIAKYIESTHKDLPPTHSALLTHHLKRLKNNGLLVMVKKSYKLASTARSEGFIPDSAPVPVLSNPNPPDASPGPKRGRGRPPKPKPISQPTLQTVDPNPTQQPVTVTVPLAGGPRKSPGRPRKNNAPAVPVPGPVPVQVQLGVRRGRGRPPKTGLKKSPGRPRKPKTVRSVVAANSVKRGRGRPPKAMNQLPPQSVLPIQGQPVAVPYADAAATTTTVTGVVQNLGRPRGRGRPKGVTSAAVAAAAVVPGKRRGRPPKLGGVSAAKPLTPRKTTGKPVGRPKKNTEGAESKASAAAYGDLKRKLEFFQSRVKQAVGVLKPQFTSESNISAIGAIQELEGLAAMDISNSTFKDDAQPMAMPPPASSNQPPFAQIEGQSLDRILLEGTNVQEVIRAMVLDIQARLLLDMLGNRIESTLVNPSALVSEMAGICERLSSVDPEIMAVDPALVQSIQAYVYAVLDKQGGGAMQVFVAHWQVMLSLLVLAWQQPQYGSKSYPKFSSSSNKPGSLIQAWVQCTTATAMISSSTDGVSNSTPNPIGPSSFMPISINMGTFPGTPAVRLIGEGHLLHRLCQLLLFCFFFQQAQPPLFAQRTSDANPQKPEPGAPGKMEEVNSVSVKPTTTMTRADEAQGSRAGQMKDLFLILMDLCRRTAGLAHLLPVSQIGSSSIQVRLHYIDGNYTVLPEVVEASIGPQMQNCIPHLKNGIDGICLAVYPWSDSLDMSYYLENILEPKPCGEGSVSCLKEMQHLKI
Length767
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.04
Grand average of hydropathy-0.267
Instability index45.11
Isoelectric point9.96
Molecular weight81900.79
Publications









Function






Annotated function


GO - Cellular Component
nucleosome	GO:0000786	IEA:InterPro
nucleus	GO:0005634	IEA:UniProtKB-KW

GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-KW

GO - Biological Process
nucleosome assembly	GO:0006334	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11547
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     166.56|      28|      29|     100|     127|       1
---------------------------------------------------------------------------
   72-   91 (28.28/ 7.80)	........PDSAPV..PVLS.......NPNP...PDAS.PG
   92-  126 (45.38/16.85)	PkrgrgrpPKPKPISQPTLQTV.....DPNPTQQPVTV.TV
  127-  157 (34.70/11.20)	P...laggPRKSP.GRPRKNNA.....PAVPVPGPVPV.QV
  168-  189 (28.21/ 7.76)	P.......PKT.G.....LKK......SPGRPRKPKTVrSV
  225-  257 (29.99/ 8.70)	P.......YADAAATTTTVTGVvqnlgRPRGRGRPKGV.TS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.79|      29|     173|     338|     367|       2
---------------------------------------------------------------------------
  338-  367 (46.37/36.55)	PQFTSESNI..SAIGAIQELEGLAAMdISNST
  514-  544 (48.42/32.94)	PKFSSSSNKpgSLIQAWVQCTTATAM.ISSST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.96|      32|      71|     190|     222|       3
---------------------------------------------------------------------------
  190-  222 (58.01/26.68)	VAANSV...KRgRGRPPK..AMNQLPPQSVLPIQGQPV
  260-  296 (47.95/17.91)	VAAAAVvpgKR.RGRPPKlgGVSAAKPLTPRKTTGKPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.55|      15|      18|     421|     437|       4
---------------------------------------------------------------------------
  421-  437 (22.04/21.65)	LLLDMLG..NRIEStlVNP
  440-  456 (21.51/13.35)	LVSEMAGicERLSS..VDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.99|      17|      17|     297|     313|       7
---------------------------------------------------------------------------
  297-  313 (27.75/17.11)	GRPKKNTEGAESKASAA
  316-  332 (28.24/17.53)	GDLKRKLEFFQSRVKQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.81|      42|     665|      14|      55|       8
---------------------------------------------------------------------------
   14-   55 (71.81/49.51)	GSSKRAI.AKYIESTHKDLPPTHSALLTHHLK....RLKN..NGLLVMV
  681-  729 (59.00/39.34)	GSSSIQVrLHYIDGNYTVLPEVVEASIGPQMQncipHLKNgiDGICLAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11547 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQRTSDANPQKPEPGAPGKMEEVNSVSVKPTTTMTRADEAQ
2) FIPDSAPVPVLSNPNPPDASPGPKRGRGRPPKPKPISQPTLQTVDPNPTQQPVTVTVPLAGGPRKSPGRPRKNNAPAVPVPGPVPVQVQLGVRRGRGRPPKTGLKKSPGRPRKPKTVRSVVAANSVKRGRGRPPKAMNQLPPQSVLPIQGQPVAVPYADAAATTTTVTGVVQNLGRPRGRGRPKGVTSAAVAAAAVVPGKRRGRPPKLGGVSAAKPLTPRKTTGKPVGRPKKNTEGAESKASA
3) SKRAIAKYIESTHKDLPPTHSALLTHHLKRLK
607
70
16
647
312
47










Molecular Recognition Features






MoRF SequenceStartStop




1) KTGLKK
170
175