<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11546

Description Uncharacterized protein
SequenceMNQQQSSGNTTKDPEEDPLAQSVVVDSTVKTGPDKPVASDPVSVASGEDEVVSASDKSEDQMEDDSVNPATVFCIRLKQPRSNLRHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANSPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGPAHLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSNPANSKSTFEEKFLSQQSQNSARWPNFLCVCSVFSSGSVQLHWSQWPPTQGSTARKWFCTSKGILGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGFQATAKTSTSNGIPPSVNPPNWAGFAPLAAYLFSWQEYLISEAKQGKKSTDQDFNDAVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPTITGWRVQRWESSLQPVVIHHIFGNPSSSFGGQAPMQTVWVSKVDTSIPPTNDFKSQPAAPAGATSDARKASDLSAEKSKRVSFDPFDLPSDVRTLARIVYSAHGGEIAISFLRGGVHIFSGPNFTPVDNYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPSSQTKSNSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVSEPWQASGETLSSIDPEAMAVDPALVQSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGTNRNMVASPTQSSATPATSQAGQSGTTSSTGSTQMQAWVQGAIAKISSSTDGVSNSTPNPIGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRFAQRTSDANPQKPQPGAPGKMEEVNSVSVKPTTMTRGDEAQGSRAGQVVPGAKGAEEGPAGRLKMGSGNAGQGYTFEEVKVLFLILMDLCRRTAGLAHPLPVSQVGSSSIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDMGPIDDSPRLSNSIDSLDMSSSENSDVYYGTQTLWPRKRRLSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPGSTNQPNQNERETWWISRWAYGCPMCGGTWVRVV
Length1250
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.08
Grand average of hydropathy-0.244
Instability index44.79
Isoelectric point6.27
Molecular weight134971.23
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11546
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     278.64|      94|     112|     415|     525|       1
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  420-  525 (147.17/109.55)	QSAATTTWGSGVTA.....VAFDPTRGGSVIAVV..IVegqYmSPYDPDEGPTITGWRVQRWES.SLQPVVIHHIfgNPSSSFGGQAPMQT......VW..VSKvDTSIPptndfK....SQPAAP
  527-  640 (131.47/64.06)	GATSDARKASDLSAekskrVSFDPFDLPSDVRTLarIV...Y.SAHGGEIAISFLRGGVHIFSGpNFTPVDNYQI..NVGSAIAAPAFSSTsccsasVWhdTSK.DRTIL.....KiirvLPPAVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     271.95|      84|     528|     170|     369|       2
---------------------------------------------------------------------------
  100-  129 (26.49/88.49)	...................................................................VAWC...GKLNAIACASETCAR..IPSSnANSPFW
  274-  363 (145.72/60.03)	WSQWPPTQgstARKWFCTS....KGILGAGpSGIMAADAIITDSGA.....MHVAGV..PIVNPSTIVVWEVTPGPGNGFQATAKTSTSngIPPS.VNPPNW
  698-  777 (99.75/19.88)	FHSLPSIQ...HRQQYGPSldriKCRLLEG.TNAQEVRAMVLDMQArllldMLGKGIesALVNPSALV...SEP.....WQASGETLSS..IDP........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     207.84|      63|     103|     840|     902|       3
---------------------------------------------------------------------------
  840-  902 (108.22/67.82)	SSATPATSQAGQSGTTSSTGSTQMQ..AWVQGAIAKISSSTDGVSNSTPNPIGPSSFMPI.SINTG
  945- 1010 (99.62/61.71)	SDANPQKPQPGAPGKMEEVNSVSVKptTMTRGDEAQGSRAGQVVPGAKGAEEGPAGRLKMgSGNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.24|      13|     112|     803|     815|       4
---------------------------------------------------------------------------
  803-  815 (26.22/17.02)	HFITRLRRYASFC
  917-  929 (27.02/17.75)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     346.55|     106|     972|     149|     262|       5
---------------------------------------------------------------------------
  149-  262 (178.91/110.40)	IADSPR..DSVQFIEWSPTSCPRAllianFHGRITIWTQP...SQGPAHLVRDASCWQREHEW....RQDIaVVTKWLSGVSPYrWLS.....SKSSNPANSKSTFEEKFLSQQSQNSARWpNFLC.VC
 1122- 1242 (167.64/85.65)	IDDSPRlsNSIDSLDMSSSENSDV.....YYGTQTLWPRKrrlSERDAAFGLNTSVGLGAYLGimgsRRDV.VTAVWKTGLEGV.WYKcirclRQTSAFASPGSTNQPNQNERETWWISRW.AYGCpMC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11546 with Med16 domain of Kingdom Viridiplantae
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