<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11541

Description Uncharacterized protein
SequenceMAARLTVCQIQNPQKLHHSQVEKAWQVLSSLPTSCRTYLRPGTTCPVNNSSDEISHNRRGRYTLTNSSDMKWSENMHVQHNTNETNGKISELGRCMASSFPSSNVSAMEDGYNLQGHSEAKTSMFNHSNSKVLGKSLRNPSVNSGQLKQSAEVLVNDIDDDDLLEDIDVDQIVSEHYQSTCTPQPSVSKFPPITPSVDKNAFSGREEPCLPPELCSVCNHGCQLGLCPEAASHLQEKKDMLIAVSNELLDNATNLSPDQIEKLRQDRLQLNKQIQQLEKHLSDVERQKSHFSASTATCTFQYGTPQTASISIEPIRFDAQVHLRNEPNGYENWNSSSVSFSSANSFGVSGGVGREPYIPKIIEVNYIEGSHDQKWSSRDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPAFICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSASMDWPEQQEILRELTSDYCKYKLLYVTPEKVAKSDVLLRHLDSLNTRDLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKYPKTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVIPKTKKCVEDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQEYGHKAAFYHGNMDAAQRASIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYSYSDYIRVKHMISQGVVEQSPSVSGYNRFNNSGRILETNTENLLRMVSYCENDVDCRRLLQLLHFGEKFDSANCQKTCDNCCRVNSFIEKDVNNIAKQLVELVKSTGQQYSSSHILEVYRGSLSQFVKRHRHETLSLHGAGKHLAKGEASRVLRHLVTEEFLVEEVKKSDIYGSVSSVLKVNESKVQNLCFGGHTITLRFPSSAKATKLSKPGATPAKGSLTSGRLSPPRVDTPAQSNSNVDLNLSAKLYSALRMLRTLLVKEAADGVMAYHIFGNATLQHISKRVPRTKEELLEINGIGKAKIIKYGDRLLETIEATIKEHYKTDKNNSSSNDSNDSAKRRRDANGAADGNIEDDDDFTRSTGRSKKRISKSQTLDSYYFPKDPDGNNNIQCSGNGDLEFDDFDDFDAESNCPDIRVDMSGSGRVLPSWSTT
Length1155
PositionUnknown
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-0.528
Instability index47.73
Isoelectric point6.95
Molecular weight129139.95
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11541
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.78|      27|     389|     296|     332|       1
---------------------------------------------------------------------------
  180-  208 (46.42/24.82)	TCTPQPSVSKFPPItpSVDKNAFSG....REEP
  297-  327 (45.35/44.72)	TCTFQYGTPQTASI..SIEPIRFDAqvhlRNEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.31|      24|     389|     476|     506|       2
---------------------------------------------------------------------------
  476-  506 (28.29/52.30)	EQQEILRELTSDyckyKLLYvtpEKVAKSDV
  870-  893 (39.02/34.41)	EASRVLRHLVTE....EFLV...EEVKKSDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.71|      16|     389|      31|      46|       3
---------------------------------------------------------------------------
   31-   46 (33.53/21.81)	LPT...SCRTYLRPGTTCP
  420-  438 (27.18/16.30)	MPTgggKSLTYQLPAFICP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.17|      15|     138|     387|     402|       4
---------------------------------------------------------------------------
  387-  402 (24.58/19.29)	EANNKKVFGnHSFRPN
  527-  541 (32.59/20.75)	EAHCVSQWG.HDFRPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     123.89|      32|     182|     609|     640|       6
---------------------------------------------------------------------------
  609-  640 (57.30/37.55)	DKFIKEN...HFDECGIIYCLSRMDCEKVAEKLQE
  771-  786 (17.67/ 6.35)	..................YCENDVDCRRLL.QLLH
  789-  823 (48.91/30.95)	EKFDSANcqkTCDNCCRVNSFIEKDVNNIAKQLVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11541 with Med34 domain of Kingdom Viridiplantae
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