<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11540

Description Heat shock protein 70 family
SequenceMAAKTEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQDDMKHWPFKVIAGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMKEVAEAYLSQTVKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISSNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEDVKKKVEAKNSLENYAYNMRNTIKDEKFSGKLDPADKQKIEKAIDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGGAAGDVPMGGAEMPNGGYGKASSGGAGAGPKIEEVD
Length655
PositionUnknown
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.439
Instability index32.77
Isoelectric point5.15
Molecular weight71843.49
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11540
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.80|      52|     189|     170|     225|       4
---------------------------------------------------------------------------
  170-  225 (76.18/55.45)	GLNVMRIINePTaAAIAYGLDKKAS.RSGEKNVLIFDLggGTFDVSLLT..IEE..GIFEV
  362-  418 (75.62/41.67)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNEKVQDL..LLLDVTPLSlgIETagGVMTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.96|      29|      33|     537|     568|       5
---------------------------------------------------------------------------
  537-  568 (36.71/35.58)	DvKKKVE..AKNSLENYAYNMRNTIkDEkFSGKL
  572-  602 (45.24/28.31)	D.KQKIEkaIDETVEWLDGNQLAEV.DE.FEDKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.94|      13|      21|      42|      55|       7
---------------------------------------------------------------------------
   42-   55 (20.34/19.96)	PSYVAFtDTERLIG
   66-   78 (24.59/18.04)	PQNTVF.DAKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.65|      33|     392|      99|     140|       8
---------------------------------------------------------------------------
   99-  140 (39.29/45.11)	AGPGDKpMIVVNYKGeekQFAAEEISSMVltkmKEvAEAYLS
  501-  533 (57.36/33.06)	AGVKNK.ITITNDKG...RLSKEEIERMV....QE.AEKYKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.83|      13|     392|     229|     241|       9
---------------------------------------------------------------------------
  229-  241 (25.51/12.91)	AGDTHLGGEDFDN
  622-  634 (26.32/13.52)	AGDVPMGGAEMPN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11540 with Med37 domain of Kingdom Viridiplantae
Unable to open file!