<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11538

Description Uncharacterized protein
SequenceMKEEVRVCEMCMHRMENSVGFVHFNYETRSPYCLKQMGKGIKYLYRIEAHFEGFYMFLFFFEAHQIAEMANNPQFAGVQPHPPPLVGSMDPPRNFPPPMSGQFRPVVPAQQPQQFLPVAPQQFQPVARGVAVMNAGFPPQTQQPQFPQAMQHLPARPGQPGHIPPAPPAIPLPTAQPNQHVSPGASSLPQPNIQTPNNYMPGVPTSHLSSSYSFAPSSYGQAPVSHNVMAQYQPMPQLQPPSLPVGGQVGSQVNAVQQTVEQSSVSTATILAPSIQPKPNEEASTDWIEHTSANGRRYYYNKKTRQSSWEKPLELMTPIERADASTNWKEFTSPDGRKYYHNKVTNQSTWSIPEELKLAREQVEMASSKGLQTEVFARAPPPAPPVVKAVSSADTSTILTQGAASSPVPVSPVIDTNVKTVSVSESASPVAAPSSITNVDVVQTASDTITPSADVAESPEVSITVVNTETVKDVVVSEKISNVLEEKAIDQETATYASKQEAKNAFKALLESANVGSDWTWDQAMRVIINDKRYGSLRTLGERKQAFNEYLGQKKKQEAEERRIKQKKAREEYRKMLEECSEVTSSTRWSKAVTMFEDDDRYKAVEREKDRKDIFENYVDELRKKDRAKAQEQRKQNILEYRQFLESCDFIKANSQWRKVQDRLEADERCSRLEKIERLEIFQEYIRDLEKEEEEQRKIQKEELRKAERKNRDEFRKLMEGHVSAGTLTAKTHWRDYHLMVKDLPPYMAVASNTSGSTAKDLFEDVAEELQKQYHDDKVRVKDAVKLRKISLSSTWTLEDLRSAIVEDISSPPISDVNLKLIFEELLERVKEKEEKEAKKRKRFADDFFDLLRSIKEITSSSTWEDCKYLFESSQEFSSIGDESICKGIYEDYITQLTEETKEKERRRKEEKAKKEKDREEKERRKAKHGREKERGHEREKERGHEREKEKGHEREKEEHLREGPVEVHVEMDDHNENENKRSGKDDDKKHRKRHQSSVEILNETEKDRTKNSHRHSSDRKKSKKHTSTPESDSENRHKRHKRDRDHRNGSRRNVDPEELEDGEFGEKESR
Length1071
PositionUnknown
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-1.034
Instability index60.02
Isoelectric point6.65
Molecular weight123084.21
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11538
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     570.91|      64|      65|     572|     635|       1
---------------------------------------------------------------------------
  506-  567 (70.74/34.13)	.FKALL....ESANVGSDWTWDQA.MRVIINDKRYGSLR.......TL...GE...RKQAFNEYLGQK.........KKQ.EAEERRIKQK
  572-  635 (99.74/50.99)	EYRKMLE...ECSEVTSSTRWSKA.VTMFEDDDRYKAVE.......RE...KD...RKDIFENYVDEL.........RKK.DRAKAQEQRK
  640-  698 (79.00/38.94)	EYRQFLE...SCDFIKANSQWRKV.QDRLEADERCSRLE.......K....IE...RLEIFQEYIRDL.........EKE.E....EEQRK
  714-  775 (61.52/28.77)	EFRKLMEghvSAGTLTAKTHWRDY.HLMVKDLPPYMAVA.......SNtsgST...AKDLFEDVAEEL..................QKQYH
  786-  842 (54.29/24.57)	KLRK..........ISLSSTW.....TL..EDLRSAIVEdissppiSD...VN...LKLIFEELLERV.........KEK.EEKEAK.KRK
  847-  920 (72.28/35.03)	DFFDLLR...SIKEITSSSTWEDC.KYLFESSQEFSSIG.......DE...SI...CKGIYEDYITQLteetkekerRRKeEKAKKEKDRE
  922-  985 (63.73/30.06)	KERRKAK...HGREKERGHEREKE.RG..HEREKEKGHE.......RE...KEehlREGPVEVHV.EM.........DDH.NENENKRSGK
  990- 1053 (69.61/33.48)	KHRKRHQ...SSVEILNETEKDRTkNSHRHSSDRKKSKK.......HT...ST...PESDSENR.HKR.........HKR.DRDHRNGSRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     143.49|      17|      17|     162|     178|       2
---------------------------------------------------------------------------
   92-  111 (20.33/ 7.50)	PR.NFPP.PmsgqfrPVV..PAQQ
  112-  128 (24.33/10.55)	PQ.QFLPVA......PQQFQPVAR
  160-  176 (32.02/16.41)	PG.HIPPAP......PAIPLPTAQ
  177-  194 (22.56/ 9.20)	PNqHVSPGA......SSLPQPNIQ
  196-  212 (24.85/10.95)	PN.NYMPGV......PTSHLSSSY
  396-  412 (19.40/ 6.79)	ST.ILTQGA......ASSPVPVSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.67|      34|      40|     277|     315|       3
---------------------------------------------------------------------------
  282-  315 (67.76/47.47)	EASTDWIEHTSANGRRYYYNKKTRQSSWEKPLEL
  323-  356 (68.91/37.25)	DASTNWKEFTSPDGRKYYHNKVTNQSTWSIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.06|      19|      20|     416|     434|       4
---------------------------------------------------------------------------
  366-  383 (26.55/17.39)	ASS.............................KGLQT.EVFARAPPPA
  384-  431 (16.57/ 7.60)	PPVvkavssadtstiltqgaasspvpvspvidTNVKTVSVSESASPVA
  432-  449 (19.93/10.90)	APS...........................siTNVDVV...QTASDTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.51|      15|      20|     223|     237|       6
---------------------------------------------------------------------------
  223-  237 (29.28/20.74)	PVSHNVMAQYQPMPQ
  244-  258 (23.23/14.80)	PVGGQVGSQVNAVQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.73|      11|      20|      11|      21|       7
---------------------------------------------------------------------------
   11-   21 (21.48/14.58)	CMHRMENSVGF
   33-   43 (20.25/13.34)	CLKQMGKGIKY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11538 with Med35 domain of Kingdom Viridiplantae
Unable to open file!