<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11530

Description Uncharacterized protein
SequenceMEESPIVNATTPTNSSNKTTQELAAEGLKHLEETIEAAFQILSSMNDELCNPALWSTTPSTASSASTPNAAASNGPSPLSNGAVLQNGDSASDGGHHLEMGGIGGSGNGALDEARLRYKNSVASLRAVLAAIPNSQKAKTFETGSAASSPMEEADIDKLEDQASDLRKEVANKNEHLKLLIDQLRELITDVSTWQSPCSI
Length200
PositionHead
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.03
Grand average of hydropathy-0.442
Instability index40.27
Isoelectric point4.61
Molecular weight20947.80
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11530
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     186.61|      43|      45|       5|      47|       1
---------------------------------------------------------------------------
    5-   47 (69.84/30.34)	PIVNATTP.TNSSNKTTQELAAEGLKHLEET.IEAAFQILSSMND
   52-   93 (66.51/28.64)	PALWSTTPsTASSASTPNAAASNGPSPLSNG...AVLQNGDSASD
  127-  165 (50.26/20.33)	.AVLAAIP.NSQKAKTF.ETGSAASSPMEEAdID...KLEDQASD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11530 with Med30 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KTFETGSAASSPMEEADIDKLEDQASDLRKE
2) MEESPIVNATTPTNSSNKTTQELAAEGLKH
3) PALWSTTPSTASSASTPNAAASNGPSPLSNGAVLQNGDSASDGGHHLEMGGIGGS
139
1
52
169
30
106










Molecular Recognition Features






MoRF SequenceStartStop




1) EARLRYK
113
119