<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11529

Description "Mediator complex, subunit Med6"
SequenceMATPPVPPPQAAALGNFEAPPPPAMQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDWTCNNEQLRMRSIHPLDISQLSKMTGLEYMLSEVMEPHLFVIRKQKRDSPEKVTPMLAYYILDGSIYQAPQLCNVFAARVGRALYYISKAFTTAASKLEKIGYVDTENENEISESKGGKEAIDFKEVKRVDHILASLQRKLPPAPPPPPFPDGFIPPATAEAEKDPENQQSVVEAQPPAIDPIIDQGVEAVANKIDNVGEKELVLDGGFKVPETNSFGHTFRDYHVESERQQGVENFYRINHIYQTYDFVKKMREEYGKLNKVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPSFGGLPQWAVVGDTCPVGCAFDKSIVHHKYFEENPDYHNFAYNTKYGVYSEGCGLNNVLMSWGHDDYMYLVAKENGTTLPSPGLFIIRYHSFYALHKSGAYKHLMNEEDVENLKWLHIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPAKLRW
Length545
PositionHead
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.12
Grand average of hydropathy-0.452
Instability index51.41
Isoelectric point5.21
Molecular weight62348.05
Publications









Function






Annotated function


GO - Cellular Component
cytoplasm	GO:0005737	IEA:UniProtKB-SubCell
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
inositol oxygenase activity	GO:0050113	IEA:UniProtKB-EC
iron ion binding	GO:0005506	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
inositol catabolic process	GO:0019310	IEA:InterPro
L-ascorbic acid biosynthetic process	GO:0019853	IEA:UniProtKB-KW
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11529
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.38|      11|     187|      19|      30|       1
---------------------------------------------------------------------------
   19-   30 (21.90/12.02)	APPPPAMqPPGT
  208-  218 (26.47/10.71)	APPPPPF.PDGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     232.41|      64|     200|     270|     333|       2
---------------------------------------------------------------------------
  270-  333 (117.97/73.64)	DGGFKVPETNSF...GHTF......RDY.HVESERQQGVENFYRINHIYQTYDFV..KKMREEYGKLNKVEMSIWE
  338-  368 (29.96/13.49)	..................L......ND...VVDESDPDLDE.PQIEHLLQTAEAI..RK...DY............
  464-  536 (84.48/50.76)	ENGTTLPSPGLFiirYHSFyalhksGAYkHLMNE..EDVENLKWL.HIFNKYDLYskSKVRVDVEKVKPYYLSLIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.68|      12|     308|      64|      79|       3
---------------------------------------------------------------------------
   36-   47 (25.33/14.13)	CFRDQLWL.NTYP
   67-   79 (19.35/12.22)	CNNEQLRMrSIHP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11529 with Med6 domain of Kingdom Viridiplantae
Unable to open file!