<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11528

Description Uncharacterized protein
SequenceMCLAALLAVFLGRADASTVWKEFTTSDGRKYYYNKVTKQSKWTIPEELKLAREQAQAASSQGTPSDTGVASQAPVAGAVSSAEMTTAAVSVSSNTLQTSSPVSVTPIASVANPSPTLLSGPTVPVSQSAAMTASGVQLPAVAVTPLPAVSSGVSPIPVALVNSNTTLVSESTASQDAMHSTDGGASSHDIEEAKKGMAMAGKVNVTPVEEKVPDDEPLTYANKQEAKNAFKSLLESANVQSDWTWEQTMREIISDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERVRDREDLFENYIVELERKEREIAVEEKRRNIAEYKKFLESCDFIKANTQWRKVQDRLEDDERCSRLEKIDRLLTFQDYIKDLEEKEEEKKKMQKEQLRRAERKNRDAFCKLMEEHVADGTLTAKTYWRDYCLKVKDLPQYLAVASNTSGSTPKELFDDVAEELQNQYYEDKNRIKDAMKSRKITMVSTWAVEDFKAAIWEDVSSLPMSDINLKLVYEELLERAKEKEEKEAKKRQRLADDFTKLLHTYKEVTASSTWEDSRPLFEESQEYRSIAEESYRREIFEEYITHLQEKAKEKERKREEEKRHQSAADDGSSDKDDREESKKSRRHSSDRKKSRKHAHSPESESESRHKKHKRDHRDGSRRNSGYEELEDGEVGEDGEIQ
Length715
PositionUnknown
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-0.971
Instability index55.74
Isoelectric point5.79
Molecular weight81774.25
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11528
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     443.14|      65|      65|     285|     349|       1
---------------------------------------------------------------------------
  228-  294 (86.27/44.46)	N..AFKSLL.E...SANVQSDWTWEQTMREIISDKRYGAL..KTLGE...............RKQAFNEYLGQrkkLEA.E...ERRMR.Q.......KKAR
  295-  360 (97.64/51.22)	E..EFTKMLEE...SKELTSSMRWSKAQSLFENDERFKAV..ERVRD...............REDLFENYIVE...LER.K...EREIAvE.......EKRR
  361-  436 (76.35/38.55)	NiaEYKKFLES...CDFIKANTQWRKVQDRLEDDERCSRL..EKI.D...............RLLTFQDYIKD...LEE.KeeeKKKMQ.KeqlrraeRKNR
  437-  508 (51.07/23.51)	D..AFCKLMEEhvaDGTLTAKTYW........RDYCLK......VKDlpqylavasntsgstPKELFDDVAEE...LQN.Q.yyEDKNR.I.......KDA.
  509-  565 (41.43/17.78)	.......M..K...SRKITMVSTWA........VEDFKAAiwEDVSS.............lpMSDINLKLVYE.elLERaK...EKEEK.E.......AKKR
  570-  637 (90.37/46.89)	D..DFTKLLHT...YKEVTASSTWEDSRPLFEESQEYRSI..AEESY...............RREIFEEYITH...LQE.KakeKERKR.E.......EEKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      74.24|      18|      18|      87|     104|       2
---------------------------------------------------------------------------
   87-  102 (21.96/12.22)	.....AAVSVSSN.TLQT.SSPV
  103-  121 (14.89/ 6.11)	SVtpiASVANPSP.TL.L.SGP.
  137-  153 (20.94/11.34)	QL...PAVAVTP...LPAvSSGV
  154-  173 (16.45/ 7.46)	SP..iPVALVNSNtTLVS.ESTA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11528 with Med35 domain of Kingdom Viridiplantae
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