<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11522

Description Putative transcription cofactor
SequenceMQQQNQIQSQGQTIGIPQPQGSNQCQLLAQNENVINNMASSGFQSEMPRAPVSNVGGHSISGISQNSMGQGMPCHIYSIQQRQMQMQQGVQQQQQQQQIYYNNMNRPMKVQQGQVPRPDMHSMQQPRQSHENQMNSQLHLQGCVPKMQCINAGQGNAYRKSMQHVAPRPLHENPASTSQSQQANINSLSSQSHNIGGNFWKQNMNTLESIASTFPQANSSSLSSQSGLSVGQQNMYPLHSNPNMLQQQHLILKQQQEGQMLQSQQYHQQANQEFQMHQMPQTQQQYQQIHNVNDIKIRPEMGVKPGVFLHQQFRPGSQFPISSPQVASPKHCSPKVDPSISKTRTSLQSANSPFVVPSPSTRSPMPGESADKPVERLIKAVQSMSPVALCAAVSDIASVVIMTDTIPEPAPGKTSRASIGADLVPMTKCHLRARKFITKQHGSRRMTRYINAMPLE
Length456
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.04
Grand average of hydropathy-0.766
Instability index73.41
Isoelectric point9.70
Molecular weight50676.69
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11522
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     272.39|      36|      36|     172|     207|       1
---------------------------------------------------------------------------
   32-   66 (38.88/10.29)	ENVI......NNMASSGfQ.....SEMPRAPVSNVGGHSIS............G....ISQN
   84-  119 (52.95/16.70)	MQMQ......QGVQQQQ.Q.....QQQIYYNNMNRPMKVQQ............GQ..VPRPD
  120-  161 (40.35/10.96)	M............HSMQ.Q.....PRQSHENQMNSQLHLQGcvpkmqcinagqGN..AYRKS
  162-  203 (57.01/18.56)	MQHVaprplhENPASTS.Q.....SQQANINSLSSQSHNIG............GN..FWKQN
  204-  234 (43.67/12.47)	MNTL......ESIAST........FPQANSSSLSSQS...G............LS..VGQQN
  235-  278 (39.53/10.58)	MYPL.....hSNPNMLQ.QqhlilKQQQEGQMLQSQQYHQQ............ANqeFQMHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.26|      16|      21|     349|     364|       4
---------------------------------------------------------------------------
  349-  364 (29.03/17.33)	SANSPF..VVPSPSTRSP
  369-  386 (22.24/11.58)	SADKPVerLIKAVQSMSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11522 with Med15 domain of Kingdom Viridiplantae
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