Description | Putative transcription cofactor |
Sequence | MQQQNQIQSQGQTIGIPQPQGSNQCQLLAQNENVINNMASSGFQSEMPRAPVSNVGGHSISGISQNSMGQGMPCHIYSIQQRQMQMQQGVQQQQQQQQIYYNNMNRPMKVQQGQVPRPDMHSMQQPRQSHENQMNSQLHLQGCVPKMQCINAGQGNAYRKSMQHVAPRPLHENPASTSQSQQANINSLSSQSHNIGGNFWKQNMNTLESIASTFPQANSSSLSSQSGLSVGQQNMYPLHSNPNMLQQQHLILKQQQEGQMLQSQQYHQQANQEFQMHQMPQTQQQYQQIHNVNDIKIRPEMGVKPGVFLHQQFRPGSQFPISSPQVASPKHCSPKVDPSISKTRTSLQSANSPFVVPSPSTRSPMPGESADKPVERLIKAVQSMSPVALCAAVSDIASVVIMTDTIPEPAPGKTSRASIGADLVPMTKCHLRARKFITKQHGSRRMTRYINAMPLE |
Length | 456 |
Position | Tail |
Organism | Corchorus olitorius |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.766 |
Instability index | 73.41 |
Isoelectric point | 9.70 |
Molecular weight | 50676.69 |
Publications |
Annotated function |
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GO - Cellular Component | |
GO - Biological Function | chromatin DNA binding GO:0031490 IEA:InterPro transcription coactivator activity GO:0003713 IEA:InterPro |
GO - Biological Process |
Binary Interactions |
Repeats | >MDP11522 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 272.39| 36| 36| 172| 207| 1 --------------------------------------------------------------------------- 32- 66 (38.88/10.29) ENVI......NNMASSGfQ.....SEMPRAPVSNVGGHSIS............G....ISQN 84- 119 (52.95/16.70) MQMQ......QGVQQQQ.Q.....QQQIYYNNMNRPMKVQQ............GQ..VPRPD 120- 161 (40.35/10.96) M............HSMQ.Q.....PRQSHENQMNSQLHLQGcvpkmqcinagqGN..AYRKS 162- 203 (57.01/18.56) MQHVaprplhENPASTS.Q.....SQQANINSLSSQSHNIG............GN..FWKQN 204- 234 (43.67/12.47) MNTL......ESIAST........FPQANSSSLSSQS...G............LS..VGQQN 235- 278 (39.53/10.58) MYPL.....hSNPNMLQ.QqhlilKQQQEGQMLQSQQYHQQ............ANqeFQMHQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.26| 16| 21| 349| 364| 4 --------------------------------------------------------------------------- 349- 364 (29.03/17.33) SANSPF..VVPSPSTRSP 369- 386 (22.24/11.58) SADKPVerLIKAVQSMSP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) CHIYSI 2) LRARKFI 3) MTRYI | 74 431 446 | 79 437 450 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab