<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11520

Description "Mediator complex, subunit Med27"
SequenceMLQQQLQQHQHQLQSAAAAATPPLPAATPPLPAATSTPPPSTTGEAPPKQVALAMDRLGQAARLIADIRLGADRLLEALFVAAQPHQSSKPLHLFRQEDESMRQHLQDLRSVGRQLEESGVLNESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEQDGQGTDSASKKRRSLQTLPEDNQDILSDCKTLSDILTSLEKDTPNLKVSTYERLDWLKRASSLPASANDNTVEVPKHNFHSSSILRPEPENFVSMDKVAVIELFFPSIFRAVVSLHPAGSTDPDSVAFFSPDEGGSYIHARGSSVYHIFRHITEHAIVALQYFLGIKSETALHSLLHWICSYQTLFTKVCSKCGRLLAMDKQSALLLPPVYRPYRNFSASKTTSTQTVSSTGDQNSYVPGAYHIGCFSDEV
Length440
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-0.356
Instability index56.55
Isoelectric point6.99
Molecular weight48500.19
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11520
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.95|      43|     103|     281|     327|       1
---------------------------------------------------------------------------
  281-  327 (64.86/39.88)	FVSMDKVAviELFFPSIFRAVVSLHPAGSTDPDSVAffSPDEGGSYI
  385-  427 (73.09/34.77)	LLAMDKQS..ALLLPPVYRPYRNFSASKTTSTQTVS..STGDQNSYV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     193.21|      60|     110|       5|     114|       2
---------------------------------------------------------------------------
    4-   67 (96.38/118.51)	QQLQQH...QHQLQSAAAAATPPLPAATPPLPAATSTPPPSTTGEAPpkqvALAMDRLGQAARLIAD
  114-  176 (96.83/40.82)	RQLEESgvlNESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAG....ASAVDRTRLALKAFTD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11520 with Med27 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLQQQLQQHQHQLQSAAAAATPPLPAATPPLPAATSTPPPSTTGEAPPKQVAL
1
53










Molecular Recognition Features






MoRF SequenceStartStop




NANANA