<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11519

Description Uncharacterized protein
SequenceMGSLVEEIEGEREHDVEETIFVAVGKNLEKSKTTLFWAVNNFPGKKICVLHVHRPTHVLALTKGKLARNKLKQHAIDAFQKLERQKMREGLDEYLLILDDAGLQADAVWIEMDSVENGIVEIIRQHSIRWLVMGAAADKCYSMNLVELQSKKAIFACQEAPISCHIWFVCKGCLIYTRIGSKDRTNKEIATSSPPLESPVRTDQLELLPSESVLGVRSLEPSSCFPQGITLLQSCADLEENTDVMEEKLRPVAGYLEHPNLPSNGVVDTCGSSSSQTDEEEEYQVQASNGTDQPLELSGMDDHDLNRKVFADTVKQWKEENDAMEAEFQAKAFECLHTKEMSRRKEAEKLLEREKQEVQKMNDQRNEIMKELQMVKDQRKVLENQIAESEGTVEELEEKIISAVELLISFRKQRDNMRIEHENAIRKLKDLRKLVNGNNATFPGTEILKFSFLEINNATRNFDPSWKIGEGKYGSVYKGLLRHVHVAIKMLPSYGSQSLLVFENEVEILSRVRHPNLITVIGTCPESRSLVFEYLKNGSLEDRLACKNNTPPLPWQTRIRIASEICSALIFLHSNKPCIPHGNLKPSKVLLDANFVSKLCDSGIYSLIPLGENGDISASSCAESKADSVYMDPDYLENRKVTRESDVYSFGMILLRLLTGRPALGLLTDVKCAIETENFNMVLDRSAGDWPLEEAQLLAYLAIRCCEKESMSRPDLESEIWTALGPMRESSINSASCVGAKDLRRIPSHFVCPVFQEVMKDPLIAADGFTYEADAIRGWLNSGHDRSPMTNLQLEHCNLVPNYALLQAIQEWQQQW
Length816
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.369
Instability index46.79
Isoelectric point5.30
Molecular weight92189.20
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
plasma membrane	GO:0005886	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11519
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.95|      19|      33|     339|     369|       1
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  339-  357 (30.34/37.04)	KEMSRRKEAEKLLEREKQE
  370-  388 (30.61/11.13)	KELQMVKDQRKVLENQIAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.80|      26|      32|     419|     449|       2
---------------------------------------------------------------------------
  419-  444 (43.84/35.01)	IEHENAIRKLKDLRKLVNGN.NATFPG
  453-  479 (41.96/22.08)	LEINNATRNFDPSWKIGEGKyGSVYKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     578.49|     192|     530|      30|     255|       3
---------------------------------------------------------------------------
   30-  255 (284.25/262.82)	KSKT.TLFWAVNNFPGKKIC....VLHVHRPthvlALTKGKLARNKLKQHAiDAFQKLERQKMRE....GLDEYLLILDDAGLQADAVWIEMDSVEN............GIVeIIRQHSIRwLVMGAAAD.KC....YSMNLVeLQSKKAIFACQEAPISCHIWFVCkgCliytrigskdrtnKEIATSSPPLESPVRTdqlELLP.SESvlgvrSLEPSSCF.PQGITLLQS...CADLEEntdVMEEKLRPVAGY
  547-  769 (294.24/190.72)	KNNTpPLPWQTRIRIASEICsaliFLHSNKP....CIPHGNLKPSKVLLDA.NFVSKLCDSGIYSliplGENGDISASSCAESKADSVYMDPDYLENrkvtresdvysfGMI.LLRLLTGR.PALGLLTDvKCaietENFNMV.LDRSAGDWPLEEAQLLAYLAIRC..C.............EKESMSRPDLESEIWT...ALGPmRES.....SINSASCVgAKDLRRIPShfvCPVFQE...VMKDPLIAADGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.26|      21|      33|     482|     503|       4
---------------------------------------------------------------------------
  482-  503 (31.96/25.24)	RHVHVaIKMLPSYGSQSLLVFE
  513-  533 (40.30/27.34)	RHPNL.ITVIGTCPESRSLVFE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11519 with Med32 domain of Kingdom Viridiplantae
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