<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11517

Description Uncharacterized protein
SequenceMELLNPPHPPHQDPNRDFIPELGFRRQVDIPASTQLPGIAEEAGAVSAGDKDKVFVAVGKSVEKAVSLLQWTLRWFGVGKLPASQANAEVVSAYRREERQHLKKLLESYSSVCGKLKVKTSIISVEADQVHKGIVELVNRHLIRNLVFGAIPENCVRMKKSSSKASYAARNAPYYCEIWFVNKGKLVWTREASEEPNSFPPSFSSPSCTNSGSECASSETRLSLDEEENLYSRLREVSMEAEASKNEALAESSKCQKLESQAMEAFSKLKDFESAHIREVKLRKEVDEALRTTMEEQEKLIKVKEEVTRELQKTMRNVALLNSRAQQANHRHDEATGELKFLRASIATLQQEKQRIRQQKMEAVRWLERWRSRGQAGTAACNGFIGLVEDLPELAEFSLADVQSATCNFSESFKIGKGGHGCVYKGEMLGRTVAIKKLYPHNMQGQSEFQQEAQVLSKLQHPHLVTLLGVCPEAWALAYEYLPNGSLQDRLFRKTSVSPLTWKIRARIVAEISSALCFLHSTKPEKIVHGDLKPENILLDSELRCKICDFGISRLVTEDTLYCPSFRRGTEPKGAFPYSDPEFHRIGVLTPKSDIYAFGLIVLQILTGRPPVGLAGEVRKAMSCGKLDSILDTSAGEWPMFVARRLADLGLQCCELYGRDRPDLKPSLVRELGQLHLSDERTVPSFFLCPILQEIMHDPQVAADGFTYEGEALRGWLENGRETSPMTNLTLSHLHLTPNHALRQAIQDWLCKA
Length753
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-0.383
Instability index44.60
Isoelectric point7.53
Molecular weight84498.68
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11517
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     355.78|     117|     135|     401|     534|       1
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  401-  534 (172.22/123.71)	DVQSATCNFSESFKIGKGGHGCvykgEMLGRTVAIKKLYPHnmqGQSEFQQEAQVLSK..LQHPHLVT...LLGVCPEAWA.LAYEYLPNGSLqDRLFrKTSVSplTWKI.RARIVAEISSALCFLHS.TKPekivhgDLKP
  542-  666 (183.56/95.07)	ELRCKICDFGISRLVTEDTLYC....PSFRRGTEPKGAFPY...SDPEFHRIGVLTPKsdIYAFGLIVlqiLTGRPPVGLAgEVRKAMSCGKL.DSIL.DTSAG..EWPMfVARRLADLGLQCCELYGrDRP......DLKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.22|      14|      43|      35|      48|       2
---------------------------------------------------------------------------
   35-   48 (23.44/17.79)	QLPGIAEEAGAVSA
   80-   93 (22.77/17.04)	KLPASQANAEVVSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.93|      40|      43|     228|     270|       3
---------------------------------------------------------------------------
  194-  239 (58.84/43.62)	EEPNSFPPSFS.SPSCTNSGSECASSETRLSldeeENlySRLREVSM
  240-  282 (53.08/37.06)	EAEASKNEALAeSSKCQKLESQAMEAFSKLK..dfES..AHIREVKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.77|      19|      43|     304|     322|       4
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  283-  301 (29.91/23.09)	RKEVDEALRTTMEEQEKLI
  304-  322 (29.87/23.05)	KEEVTRELQKTMRNVALLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.14|      39|     347|     330|     368|       6
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  330-  368 (67.03/52.51)	HRHDEATGELKFLRASIATLQQEKQRIRQQ...KMEAVR.WLE
  676-  718 (61.10/47.14)	HLSDERTVPSFFLCPILQEIMHDPQVAADGftyEGEALRgWLE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11517 with Med32 domain of Kingdom Viridiplantae
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