<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11515

Description Uncharacterized protein
SequenceMSVSSASRGGAPTSMMTVVVAVKGGSSGGRGSRRAARWAVENLKADRFLLVHVMPAVTSVPTPSGDRIPITEMDENVVEMYVKEVKLQFEENFVPFKKLFKSKKMETLVLEDDNPAIALLAYVSEFGIDTLVLGSCGSNCITRKLKGPGIPRIVLKCAPDSCEVHVVYRQRIITKSANRLSTSGPSHRPPMFTGTFQTESSTGINHISHTANASIESVPNSYGIGSLSELDYPYSRAISSDDRAYQERFHQNIRENMESSTLGNSNSVASTNSERLDLQAEVEQLRLELQNTVAMYKQACEELVHTQNKVQLLSSECLDEARRVNAAVEREETFRKIAAEEKAKYLQAMKEVEEAKNLLSREAYERNVAELNALKESLEKQKIVDALFCSDRRYRKYTREEIEVATDFFSESNVIGQGGYGKVYKCSLHRTPVAVKVLQPDAVDRKQEFLKEVEVLSQLRHPHIVLLLGACPENGCLIYEYMENGNLEEHILLQNGKPPLPWFIRFRIVFEVASGLAFLHNSKPDPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDVVPDNITEYKESVIAGTLCYMDPEYMRTGTIRPKSDLYALGVTTLQLLTGRHPNGLLLTIENAITKGSLADILDKSVTDWPLAETEELARIALKCSKLRCRDRPDLDTEVLPILKRLVDVADASLKLEKNNVYAPSHYFCPILQEVMDDPHIAADGFTYEHRAIKAWLEKHNVSPVTKLRLQHSTLTPNHTLRSAIQDWKSRVTLSST
Length766
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.313
Instability index44.13
Isoelectric point6.50
Molecular weight85744.00
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11515
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.62|      49|     263|     352|     404|       3
---------------------------------------------------------------------------
  352-  404 (66.73/66.89)	VEEA..KNLLSrEAYERNVAELnALKESLEKQKIvdALFCSDRRYRKYTREEIEV
  618-  668 (78.89/59.39)	IENAitKGSLA.DILDKSVTDW.PLAETEELARI..ALKCSKLRCRDRPDLDTEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.56|      11|      16|     290|     300|       4
---------------------------------------------------------------------------
  290-  300 (20.52/12.71)	QNTVAMYKQAC
  307-  317 (19.04/11.35)	QNKVQLLSSEC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11515 with Med32 domain of Kingdom Viridiplantae
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