<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11507

Description Ergosterol biosynthesis ERG4/ERG24
SequenceMSCCDWTLLSASGAQLIGRSAASPSAATSATSFDNTSNSPLPYVNSPRSGTTMMNTPSPRSLVLHGQMQYSQSLGHQQFQGRQLPPGHVQHGIGQSQLNQGNQLSRQLSQFSSPANTALFNAAQATPRPSTQMIPNMSATYYVITVTSTTDAVFNMGSSASELIVSQIDSGQLTHSPGFVDRIRGHGSCLGQPLESMHFPNIILTFSLPNPKIKEPWIPWREDERIRRKSPPKAIPAAQQSSDVEPSQPETKNDTVGESKDIEVEESVSVDDFDLLDKFSSTTTKRQVLRESSSKSLWSGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAESYCIKQYELYGKVADSMLVNTILMLVYVTKFFWWEAGYWNTMDIAHDRAGFYIYWGCLVWVPSVHTSPGMYLVNHPVNLGTQLALYILVAGILCIYINYDCDRQRQEFRRTNGKCKVWGKAPSKIEATYTTSGETKTNLLLTSGWRGLSRHFHFVPEILAAFFWTVPALFNHKLKWMKTNYLSLLKHLARKDSMHVHSEDSHGEVLRGDRIGNSPLCFKMREPKMCAVVCQIKLDAETVRRYLTTFLLLLYKRRLDQESTTVYQLGYHIGSNANIAG
Length608
PositionHead
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.10
Grand average of hydropathy-0.291
Instability index49.94
Isoelectric point8.90
Molecular weight68284.11
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	GO:0016628	IEA:InterPro

GO - Biological Process
sterol biosynthetic process	GO:0016126	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11507
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.94|      23|     284|     198|     220|       3
---------------------------------------------------------------------------
  198-  220 (46.49/26.83)	HF.PNIILTFSLPNPKIKEPWIPW
  484-  507 (40.45/22.51)	HFvPEILAAFFWTVPALFNHKLKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.04|      15|      55|     374|     391|       4
---------------------------------------------------------------------------
  369-  384 (25.83/15.87)	YWNT...mDIAHDRAGFYI
  385-  403 (27.21/24.58)	YWGClvwvPSVHTSPGMYL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11507 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LGHQQFQGRQLPPGHVQHGIGQSQLNQGNQLSRQLSQ
2) RKSPPKAIPAAQQSSDVEPSQPETKNDTVGESKD
3) RSAASPSAATSATSFDNTSNSPLPYVNSPRSGTTMMNTPSPRSLVLHGQ
74
228
19
110
261
67










Molecular Recognition Features






MoRF SequenceStartStop




1) EPWIPWREDER
215
225