Description | Histone H1/H5 |
Sequence | MDPSLSSLSSIPIDLPHPIHPPPILPTIPVLAPAPAPAPVPAPAVANPTTVATGVLPPTFSHPPYSDMIVEAIGALKDSNGSSKRAIAKYIESTHRDLPPTHSALLTHHLKRLKNNGLLVMVKKSYKLASTARSEGFIPDSAPVPLPSNPNPPDASPGPKRGRGRPPKPKPISQPTLQTVDPNPTQQPVTVTVPLAEGPRKSPGRPRKNNAPAVPVPVPVQVQLGVRRGRGRPPKTGLKKSPGRPRKPKTVRSVVAANSVKRGRGRPPKAMNQLPPQSVLPIQGQPVAVPYADAAATTATGVAQNLGRPRGRGRPKGVASAAVAAAVVPGKRRGRPPKLGGVSAAKPLTPRKTTGKPVGRPKKNTEGAESKALAAAYGDLKRKVEFFQSRVKQAVGVLKPQFTSESNISAIGAIQELEGLAAMDISSTFKDDAQPMAMPPPASSNQPPLAQIEGQSLDRILLDGTNAEDVIRAMVLDMQARLLLDMLGKRTESTLAYVYAVLDLASHFIKGWQRYASFCCTLASHAVTSGTGSNRNMPAQPPCFAQRTSDANQQKPKPGAPGKMEEVNSVFVKPTTTMTRADEAQGSRAGQLVPGVAHIWISVGVPLV |
Length | 608 |
Position | Tail |
Organism | Corchorus olitorius |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus. |
Aromaticity | 0.03 |
Grand average of hydropathy | -0.369 |
Instability index | 50.25 |
Isoelectric point | 10.56 |
Molecular weight | 64022.27 |
Publications |
Annotated function |
|
GO - Cellular Component | nucleosome GO:0000786 IEA:InterPro nucleus GO:0005634 IEA:UniProtKB-KW |
GO - Biological Function | DNA binding GO:0003677 IEA:UniProtKB-KW |
GO - Biological Process | nucleosome assembly GO:0006334 IEA:InterPro |
Binary Interactions |
Repeats | >MDP11506 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 471.73| 100| 100| 150| 249| 1 --------------------------------------------------------------------------- 2- 66 (62.37/15.35) .................................................DPSLSSLSsipidlPHPIHpPPILPTIPvLAPAPAPA...P..VP....APAVANPTTVAT..GVLPPTfSHPPYS 75- 147 (76.99/20.63) ALKDSNGSSKRA.................iakyiesthRDLPPTHSALLTHHLKRLK......NNGLL.VMVKKSYK.LASTARSE...G.FIP..DSAP.VPLP.................... 150- 236 (158.06/49.91) ..............PNPPDAS..PGPKRG.........RGRPPKPKPISQPTLQTVD......PNPTQ.QPVTVTVP.LAEGPRKS...P.GRPRKNNAPAVPVPVPVQVQLGVRRGR.GRPPKT 237- 312 (119.57/36.01) GLKKSPGRPRKPKtVRSVVAA..NSVKRG.........RGRP..PKAMNQLPPQSVL......P.IQG.QPVAV...............P.....YADA.AATTATGVAQNLG..RPR.GR.... 313- 368 (54.75/12.60) ......GRPKGVA.SAAVAAAvvPG.KR..........RGRPPKLGGVS........................AAKP.LT..PRKTtgkPvGRPKKNTEGA........................ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 36.86| 12| 19| 452| 463| 2 --------------------------------------------------------------------------- 452- 463 (21.20/16.75) IEGQSLD...RILLD 471- 485 (15.66/10.51) IRAMVLDmqaRLLLD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.62| 14| 17| 528| 541| 3 --------------------------------------------------------------------------- 528- 541 (25.95/11.47) TSGTGSNRNMPAQP 548- 561 (25.67/11.27) TSDANQQKPKPGAP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) PKTGLKKSPGRPRK 2) RGRGR 3) RGRPPKA | 234 228 264 | 247 232 270 |
© 2021 Shailesh Lab
Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab