<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11506

Description Histone H1/H5
SequenceMDPSLSSLSSIPIDLPHPIHPPPILPTIPVLAPAPAPAPVPAPAVANPTTVATGVLPPTFSHPPYSDMIVEAIGALKDSNGSSKRAIAKYIESTHRDLPPTHSALLTHHLKRLKNNGLLVMVKKSYKLASTARSEGFIPDSAPVPLPSNPNPPDASPGPKRGRGRPPKPKPISQPTLQTVDPNPTQQPVTVTVPLAEGPRKSPGRPRKNNAPAVPVPVPVQVQLGVRRGRGRPPKTGLKKSPGRPRKPKTVRSVVAANSVKRGRGRPPKAMNQLPPQSVLPIQGQPVAVPYADAAATTATGVAQNLGRPRGRGRPKGVASAAVAAAVVPGKRRGRPPKLGGVSAAKPLTPRKTTGKPVGRPKKNTEGAESKALAAAYGDLKRKVEFFQSRVKQAVGVLKPQFTSESNISAIGAIQELEGLAAMDISSTFKDDAQPMAMPPPASSNQPPLAQIEGQSLDRILLDGTNAEDVIRAMVLDMQARLLLDMLGKRTESTLAYVYAVLDLASHFIKGWQRYASFCCTLASHAVTSGTGSNRNMPAQPPCFAQRTSDANQQKPKPGAPGKMEEVNSVFVKPTTTMTRADEAQGSRAGQLVPGVAHIWISVGVPLV
Length608
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.03
Grand average of hydropathy-0.369
Instability index50.25
Isoelectric point10.56
Molecular weight64022.27
Publications









Function






Annotated function


GO - Cellular Component
nucleosome	GO:0000786	IEA:InterPro
nucleus	GO:0005634	IEA:UniProtKB-KW

GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-KW

GO - Biological Process
nucleosome assembly	GO:0006334	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11506
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     471.73|     100|     100|     150|     249|       1
---------------------------------------------------------------------------
    2-   66 (62.37/15.35)	.................................................DPSLSSLSsipidlPHPIHpPPILPTIPvLAPAPAPA...P..VP....APAVANPTTVAT..GVLPPTfSHPPYS
   75-  147 (76.99/20.63)	ALKDSNGSSKRA.................iakyiesthRDLPPTHSALLTHHLKRLK......NNGLL.VMVKKSYK.LASTARSE...G.FIP..DSAP.VPLP....................
  150-  236 (158.06/49.91)	..............PNPPDAS..PGPKRG.........RGRPPKPKPISQPTLQTVD......PNPTQ.QPVTVTVP.LAEGPRKS...P.GRPRKNNAPAVPVPVPVQVQLGVRRGR.GRPPKT
  237-  312 (119.57/36.01)	GLKKSPGRPRKPKtVRSVVAA..NSVKRG.........RGRP..PKAMNQLPPQSVL......P.IQG.QPVAV...............P.....YADA.AATTATGVAQNLG..RPR.GR....
  313-  368 (54.75/12.60)	......GRPKGVA.SAAVAAAvvPG.KR..........RGRPPKLGGVS........................AAKP.LT..PRKTtgkPvGRPKKNTEGA........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.86|      12|      19|     452|     463|       2
---------------------------------------------------------------------------
  452-  463 (21.20/16.75)	IEGQSLD...RILLD
  471-  485 (15.66/10.51)	IRAMVLDmqaRLLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.62|      14|      17|     528|     541|       3
---------------------------------------------------------------------------
  528-  541 (25.95/11.47)	TSGTGSNRNMPAQP
  548-  561 (25.67/11.27)	TSDANQQKPKPGAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11506 with Med16 domain of Kingdom Viridiplantae
Unable to open file!